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4 protocols using secondary horseradish peroxidase conjugated antibodies

1

Immunoprecipitation and Western Blot Analysis

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For western blot analysis, the cells were lysed in radioimmunoprecipitation assay buffer (RIPA) buffer (50 × 10−3m Tris‐HCl, 150 × 10−3m NaCl, 5 × 10−3m ethylenediaminetetraacetic acid (EDTA), 0.5% NP‐40) containing protease inhibitor and phosphatase inhibitor cocktails (Thermo scientific). Lysates were cleared by centrifugation at 12 000 rpm for 20 min at 4 °C. The lysates were first incubated with antibody beads or agarose overnight at 4 °C, or antibodies overnight at 4 °C followed by incubation with protein A/G PLUS‐Agarose (Santa Cruz) at 4 °C for 2 h. Then the precipitates were washed five times with cold RIPA buffer and eluted with 5 x SDS sample buffer. The immunoprecipitates were separated by SDS‐PAGE and transferred to a polyvinylidene fluoride membrane (Millipore). The membranes were blocked in Tris‐buffered saline (TBS) with 5% nonfat milk and 0.1% Tween 20, probed with primary antibodies overnight at 4 °C, washed five times by TBS with 5% nonfat milk and 0.1% Tween 20, and then incubated with secondary horseradish‐peroxidase‐conjugated antibodies (Promega). ClarityTM Western ECL substrate (Bio‐Rad) was then used for detection.
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2

Western Blot Analysis of Adipocyte Proteins

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Cells were rinsed with PBS and solubilized in stop buffer containing 50 mM Hepes, pH 7.2, 150 mM NaCl, 10 mM EDTA, 10 mM Na4P2O7, 2 mM Na3VO4, and 1% Triton X-100 supplemented with Protease Inhibitor Cocktail (Roche). The primary antibodies and dilutions used were: UCP1 (1/500, Calbiochem), Perilipin 1 (1/1000, Acris Antibodies); Tubulin (1/10000, Sigma); AKT (1/1000, Cell Signaling); Phospho-AKT (Thr308) (1/1000, Cell Signaling); Phospho-Erk1/2 (Thr202/Tyr204) (1/1000, Cell Signaling); Phosphotyrosin, clone 4G10 (1/1000, Millipore); IRS1 (1/1000, Millipore); Phospho-Smad2 (1/1000, Cell Signaling); Smad 2/3 ((1/1000, Cell Signaling). Secondary horseradish peroxidase-conjugated antibodies were purchased from Promega.
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3

Exocyst complex protein analysis

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Total protein extracts were isolated from 2-4-week-old plants transformed with EXO70B2-GFP at different time points ranging from 0-24 hpi with Bg or water (mock). The protein extraction Sec6/8 buffer adjusted for exocyst extraction was used (20 mM HEPES, pH 6.8, 150 mM NaCl, 1 mM EDTA, 1 mM DTT, and 0.5% Tween, supplemented with protease inhibitor cocktail (Sigma-Aldrich)). After one hour of lysis, the extracts were spun down, and the supernatants were boiled in 6x SDS loading buffer. The proteins were loaded for 10% SDS-PAGE and blotted onto a nitrocellulose membrane, with 20 ng per lane. The membrane was stained with Ponceau S solution and blocked overnight with 5% nonfat dry milk in PBS (137 mM NaCl, 2.7 mM KCl, 10 mM Na2HPO4, and 2 mM KH2PO4, pH 7.4, 0.25% Tween 20). Primary antibody dilutions in PBS were as follows: polyclonal rabbit anti-GFP (Invitrogen), 1:800; polyclonal rabbit antibodies anti-AtSEC3, 1:5000; anti-AtSEC5, 1:5000; anti-AtSEC6 (Agrisera Sweden), 1:10000; anti-AtSEC8 (Agrisera Sweden), 1:8000; anti-AtSEC10, 1:10000; anti-AtSEC15a, 1:1000 and anti-AtEXO84b, 1:1000.
Appropriate secondary horseradish peroxidase conjugated antibodies (Promega, Madison, WI, USA) were applied, followed by chemiluminescent ECL detection (Amersham, GE Healthcare, Chicago, IL, USA).
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4

Exocyst complex protein analysis

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Total protein extracts were isolated from 2-4-week-old plants transformed with EXO70B2-GFP at different time points ranging from 0-24 hpi with Bg or water (mock). The protein extraction Sec6/8 buffer adjusted for exocyst extraction was used (20 mM HEPES, pH 6.8, 150 mM NaCl, 1 mM EDTA, 1 mM DTT, and 0.5% Tween, supplemented with protease inhibitor cocktail (Sigma-Aldrich)). After one hour of lysis, the extracts were spun down, and the supernatants were boiled in 6x SDS loading buffer. The proteins were loaded for 10% SDS-PAGE and blotted onto a nitrocellulose membrane, with 20 ng per lane. The membrane was stained with Ponceau S solution and blocked overnight with 5% nonfat dry milk in PBS (137 mM NaCl, 2.7 mM KCl, 10 mM Na2HPO4, and 2 mM KH2PO4, pH 7.4, 0.25% Tween 20). Primary antibody dilutions in PBS were as follows: polyclonal rabbit anti-GFP (Invitrogen), 1:800; polyclonal rabbit antibodies anti-AtSEC3, 1:5000; anti-AtSEC5, 1:5000; anti-AtSEC6 (Agrisera Sweden), 1:10000; anti-AtSEC8 (Agrisera Sweden), 1:8000; anti-AtSEC10, 1:10000; anti-AtSEC15a, 1:1000 and anti-AtEXO84b, 1:1000.
Appropriate secondary horseradish peroxidase conjugated antibodies (Promega, Madison, WI, USA) were applied, followed by chemiluminescent ECL detection (Amersham, GE Healthcare, Chicago, IL, USA).
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