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43 protocols using nadph

1

Rubredoxin Domain Protein Reduction Assay

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The rubredoxin domain protein (90 μM) reduction assay was measured in a reaction mixture (100 μL) containing 20 mM Tris⋅HCl, pH 8.0, 1 μM ferredoxin NADPH reductase (FNR), and 250 μM NADPH (Roche). Spinach chloroplast-purified ferredoxin NADP+ reductase and anti-FNR antibodies were kindly donated by R. Malkin, University of California, Berkeley, CA. The reaction was monitored in a 96-well plate with a UV transparent flat bottom (Corning) with TECAM Infinity 2000 plate reader by measuring absorption spectra from 350 to 700 nm. Equine heart Cyt c was purchased from Sigma-Aldrich. Cyt c reduction (50 μM) was measured by changes in absorbance at 550 nm in a reaction mixture (100 μL) containing 20 mM Tris⋅HCl, pH 8.0, 1 μM FNR, and 250 μM NADPH (Roche) in the presence or absence of rubredoxin domain proteins (5 μM). Reactions were started by the addition of NADPH, and the increase in A550 due to the reduction of Cyt c was measured and followed for 125 s.
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2

Grx1 Activity Assay in Lung Tissue

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Grx1 activity was assayed as described previously73 –75 (link). Briefly, lung tissue was lysed in 137 mM Tris-HCl, pH 8.0, 130 mM NaCl, and 1% NP-40. Lysates were then cleared by centrifugation and 100 μg was incubated with reaction mixtures containing Na/K phosphate buffer (0.1 mM, pH 7.5), 0.5 mM GSH (Sigma-Aldrich, G4251), 2 units/mL GSSG reductase (Sigma-Aldrich, G3664), 0.1 mM L-CySSG (Cayman, 17582), 0.2 mM NADPH (Roche, 10107824001) and 1.5 mM EDTA (pH 8.0) or with reaction buffer consisting of 137 mM Tris-HCl buffer (pH 8.0), 0.5 mM GSH (Sigma-Aldrich, G4251), 1.2 units GSSG reductase (Roche, 10105678001), 2.5 mM 2-hydroxyethyl disulfide (Sigma-Aldrich, 380474), 0.35 mM NADPH (Roche, 10107824001), 1.5 mM EDTA (pH 8.0). The reaction was prepared in a 96-well plate (final volume of 200 µL) and proceeded at 30 °C. The consumption of NAPDH was followed spectrophotometrically at 340 nm. In each sample, the spontaneous consumption of NADPH was subtracted. Data are expressed in units (U)/mg protein for lung homogenates in which 1 U equals the oxidation of 1 μmol NADPH/min.
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3

Cytochrome P450 Mediated Metabolism

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Tolbutamide was purchased from Dr. Ehrenstorfer GmbH (Augsburg, Germany). 4-hydroxyTolbutamide and 6-hydroxychlorzoxazone were obtained from Toronto Research Chemicals Inc. (North York, Canada). Dextromethorphan, dextrorphan and chlorzoxazone were supplied by Sigma-Aldrich Co. (St Louis, MO, USA). Testosterone was obtained from International Laboratory Limited (San Bruno, CA, USA). 6β-hydroxytestosterone was purchased from BD Biosciences Co. (Woburn, MA, USA). Phenacetin, cortisone acetate, EB and EE were from National Institute for the Control of Pharmaceutical and Biological Products (Beijing, China). NADPH was obtained from Roche Diagnostics GmbH (Mannheim, Germany). All other reagents were of HPLC or analytical grade.
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4

Baicalin Purification and Characterization

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Baicalin (>98.5% purity) was received as a gift from Henan Provincial Institute of Food and Drug Control. Nifedipine was purchased from the National Institute for the Control of Pharmaceutical and Biological Products (Beijing, China). NADPH was obtained from Roche Co. Ltd. (Switzerland). Diazepam injections were purchased from Tianjin Jin Yao Amino Acid Co., Ltd. (China). Ultrafiltration tubes (0.5 ml, 10KD) were purchased from Millipore (USA). All organic solvents of HPLC purity were obtained from Siyou Chemical Reagent Co. (Tianjin, China).
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5

Synthesis and Characterization of 2-Chlorotrityl Chloride Resin

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2-Chlorotrityl Chloride Resin (1.1 mmol/g) was purchased from Nankai University resin Co. Ltd. Fmoc-amino acids and o-benzotriazol-1-yl-N,N,N′,N′-tetramethyluronium hexafluorophosphate (HBTU) were obtained from GL Biochem (Shanghai, China). NADPH was bought by Roche Co. Ltd. Rat liver microsomes were purchased from Sigma. Alkali phosphatase (30 U/μL) was obtained from Takara (D2250, Dalian, China) Bio. Inc. PERK antibody (YT3667, Immunoway Co., Ltd.), phospho-eIF2α (Ser51) antibody (3398, CST), GRP78 BiP antibody (YT5858, Immunoway), CHOP antibody (15204-1-AP, Proteintech), calnexin antibody (10427-2-AP, Proteintech), and cytochrome C (10993-1-AP). Commercially available reagents and solvents were used without further purification, unless noted otherwise.
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6

Ethanol-based NADPH Regeneration System

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Ethanol (≥99.5%,
Etax Aa) was from Altia (Helsinki, Finland). Water was deionized by
Milli-Q gradient A10. All chemicals were of the highest purity available
from their commercial suppliers. Trichloroacetic acid, 7-ethoxycoumarin,
Tris-HCl, MnCl2, MgCl2, reduced glutathione
(GSH), isocitric acid, and isocitric acid dehydrogenase were purchased
from Sigma-Aldrich (Steinheim, Germany), KCl was purchased from J.T.
Baker, and NADPH and NADP+ were purchased from Roche Diagnostics
(Mannheim, Germany). The NADPH regenerating system (200 mL) contained
178.5 mg of NADP+ (nicotinamide adenine dinucleotide phosphate),
645 mg of isocitric acid, 340 mg of KCl, 240 mg of MgCl2, 0.32 mg of MnCl2, and 15 U isocitric acid dehydrogenase.
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7

Enzymatic Assay for P5CS Activity

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The full-length wild-type or mutant P5CS (100 nM protein) activity was determined in the reaction buffer containing 25  mM HEPES pH 7.5, and 10 mM l-glutamate (Sigma), with added 20  mM MgCl2, 10  mM ATP (Takara), and 0.5  mM NADPH (Roche) used to initiate the reaction (Magini et al., 2019 (link); Sabbioni et al., 2021 (link)), then the reaction was monitored at 37°C in an MD-SpectraMax i3 plate reader and absorbance at 340 nm was measured every 20 s for 10  min (one experiment, n  =  3). The NADPH concentration was converted from A340 with the standard curve determined at the same experiment.
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8

Detailed Biochemical Analysis Protocols

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All chemicals and substrates used for chemical and biochemical analyses were purchased from Sigma-Aldrich Ltd. (Gillingham, United Kingdom), except for acetyl coenzyme A, adenosine-5′-triphosphate (ATP), dithiothreitol, n-dodecyl β-D maltopyranoside, leupeptin, nicotinamide adenine dinucleotide (NAD), NADH, nicotinamide adenine dinucleotide phosphate (NADP), NADPH and phosphoenolpyruvate, that were purchased from Roche Applied Science (Meylan, F). All enzymes were purchased from Roche Applied Science (Meylan, F) except aldolase (from rabbit muscle), glycerokinase (from E. coli) and triose phosphate isomerase (from rabbit muscle) that were purchased from Sigma-Aldrich Ltd. (Gillingham, United Kingdom). Bradford reagent was purchased from Bio-Rad (Marnes-la-Coquette, F). Reagents used for mRNA quantification were purchased from Fisher Scientific (Illkirch, F), Qiagen (Courtaboeuf, F), Bio-Rad (Mitry-Mory, F), and Promega (Charbonnières-les-Bains, F).
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9

Peroxide Quantification and Handling

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All chemicals were of
reagent grade and were
used without additional purification. Tris was from VWR (West Chester,
PA). Tris, (2-carboxyethyl)phosphine hydrochloride (TCEP), tert-butyl hydroperoxide (tBOOH), cumene
hydroperoxide (CuOOH), saccharose, Trp, NaF, KCl, and MgCl2 were from Merck (Darmstadt, Germany). NADPH was obtained from Roche
(Basel, Switzerland), and dithiothreitol (DTT) and ammonium sulfate
were from Euromedex (Souffelweyersheim, France). Hydrogen peroxide
(H2O2) was from Acros Organics (Geel, Belgium).
Peroxide stock concentrations were measured accurately by the peroxidase
enzymatic coupled assay using Tsa1/Trx/Trx reductase/NADPH, following
the total NADPH consumption at 340 nm (ε340 = 6200
M–1 cm–1).
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10

Cytochrome P450 Enzyme Activation

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TCCS: Drug was calculated with suitable dosage and administered directly.
MHCCS: After administrating the same dosage drug, well prepared microsomes-Pluronic-F127-acrylamide-bisacrylamide hydrogel and 1 mM NADPH (Roche) were added immediately into cell culture system. The preparation of microsomes-hydrogel was described as21 (link).
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