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58 protocols using dual luciferase reporter gene detection kit

1

Cloning Luciferase Reporters for miR-217 Targets

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To construct wild-type (circ_0033596 WT, CLIC4 WT) or mutant (circ_0033596 MUT, CLIC4 MUT) luciferase reporter gene vectors, we amplified the binding sequences predicted by bioinformatics between miR-217-5p and circ_0033596 or between miR-217-5p and CLIC4 mRNA 3’-UTR or the mutated sequences, and cloned them into the pmirGLO Dual-Luciferase miRNA Target Expression Vector (Promega, Madison, WI, USA). The above-mentioned reporter vectors and miR-217-5p mimics (or the negative control) were co-transfected into HUVECs. The luciferase activity was measured with a dual-luciferase reporter gene detection kit (Promega, Madison, WI, USA) 48 h after the transfection.
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2

Dual Luciferase Assay for EPAS1-miR-152-3p Interaction

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Based on a search of related literature and different databases (TargtScan, Pictar, Pita, Miranda), we predicted that EPAS1 is the target gene of miR-152-3p. The sequence of the 3′-untranslated region (UTR) of EPAS1 was amplified and inserted into the reporter gene vector, pGL3, which was designated as the EPAS1 wt plasmid. A mutated fragment of 3′-UTR of EPAS1 was also amplified and inserted into the pGL3 vector, which was designated as the EPAS1 mut plasmid. miR-152-3p mimics and miR-152-3p NC were co-transfected into MCF-7/TAX cells with the EPAS1 wt and EPAS1 mut plasmids, respectively. After 36 h, the cells were lysed with Passive Lysis Buffer (Promega, Madison, WI, USA) and the supernatant was collected. Luciferase activity was detected using a dual luciferase reporter gene detection kit (Promega) following the manufacturer's instructions. Relative luciferase activity was calculated using the formula: relative luciferase activity = fluorescence value using Renilla luciferase/fluorescence value using firefly luciferase.
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3

Regulation of CircFAT1 and SMAD5 by miR-4781-3p

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miR-4781-3p and negative control were transfected into HEK-293 T cells. 100 ng circFAT1 or SMAD5 wild-type reporter plasmid and 20 ng renilla luciferase (RL) reporter plasmid was simultaneously transfected into HEK-293 T cells. Set circFAT1 or SMAD5 reported plasmid mutations as the control. After 48 hours, a dual-luciferase reporter gene detection kit (Promega, Madison, USA) was used to detect luciferase activity.
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4

Dual Luciferase Assay for RUNX1 3'UTR

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The wild-type and mutant-type 3′UTR sequences of RUNX1 were inserted into the pmirGLO dual luciferase reporter vector (E1330; Promega Corporation) to construct wild-type (WT) and mutated-type (MUT) luciferase reporter plasmids. The luciferase plasmid (200 ng) was then combined with 60 nM miR-18a-5p mimics/inhibitor and co-transfected into OCI-Ly3 cells. Lipofectamine 2000® reagent (Invitrogen; Thermo Fisher Scientific, Inc.) was used for transfection. Following transfection, the cells were washed with pre-cooled PBS, and then lysed using a dual luciferase reporter gene detection kit (E1960; Promega Corporation). Subsequently, 30 µl Firefly luciferase detection reagent were added to the lysis solution, and the relative light unit (RLU) was measured using a multifunctional microplate reader (Fluoroskan ascent FL, Thermo Fisher Scientific, Inc.). Renilla luciferase detection solution (30 µl) was then added to the lysate for RLU determination. Finally, the relative luciferase activity was calculated (E1960; Promega Corporation).
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5

Transfection and Luciferase Assay

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ARPE-19 and rabbit lens epithelial cells were seeded into six-well plates and co-transfected with MIAT/miR-26b or miR-26b/BCL2L2. After 48 h of transfection, the cells were harvested and the luciferase activity in the cells was measured using a dual-luciferase reporter gene detection kit (Promega, Madison, WI, USA) on a bioluminescence detector (Modulus, Promega, Madison, WI, USA) following the manufacturer’s instructions.
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6

Dual-Luciferase Assay for miR-33-5p Binding

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The wild-type and mutant 3’UTR DNA fragments of JNK1 covering the predicted binding sites of miR-33-5p were successfully replicated. The psiCHECK™-2-JNK1-3’UTR (wild type and mutant) vector was constructed by combining the luciferase vector psi-CHECK™-2 (Promega, Madison, WI, USA) with JNK1-3’UTR (wild type and mutant). Similarly, we cloned the CDS of JNK1 or Lnc90386 into the pcDNA3.1 vector. The primers are described in Table 1.
Dual-luciferase reporter assay is detailed in our previous reports (16 (link)). In a nutshell, when cells reached 80-90% confluence, using Lipofectamine 2000 (Invitrogen Life Technologies, USA) each co-transfected cells with wild-type or mutant reporter plasmid (200 ng) and 10 pmol of the indicated RNA oligonucleotides. Then, the luciferase activity in each group was detected by using an automatic microplate reader (Bio-Rad, Hercules, CA, USA) in accordance with the dual luciferase reporter gene detection kit instructions (Promega, Madison, WI, USA) according to the manufacturer’s protocol.
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7

Regulation of HDMCP by miR-146 via Luciferase Assay

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The regulatory role of miR-146 on HDMCP was tested with dual luciferase report system. Firstly, the normal gene fragment containing 3’ UTR region of HDMCP wide type and the specific dual-luciferase miRNA target expression vector-pmirGLO (Promega, the USA) were both cut with SacⅠand SalⅠ. These two segments were then connected with T4 DNA ligase (Fermentas, Lithuania) at 22℃ for 2h. Secondly, the combined vector pmirGLO-HDMCP-3’UTR was used to transfect competent cell with CaCl2. Thereafter, the transfected cells were cultured at 37℃for 16h, followed by pmirGLO-HDMCP-3’UTR extraction (TIANGEN, China) and verification by gene sequencing. Thirdly, the miR-146 mimics were synthesized and cotransfected both BRL-3A and L02 cells with pmirGLO-HDMCP-3’UTR using lipofectamin 2000 (Invitrogen, The USA). After culturing at 37℃/5% CO2 for 25h, those cotransfected cells were harvested and the luciferase activity was tested using a dual-luciferase reporter gene detection kit (Promega, the USA).In this step, subjects were divided into four groups as followings: blank cell group, pmirGLO-HDMCP-3’UTR group, negative control miRNA+pmirGLO-HDMCP-3’UTR group and miR-146+pmirGLO- HDMCP-3’UTR group.
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8

Luciferase Reporter Assay for miR-221-3p Binding

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Firefly luciferase reporter plasmids with 3′-UTR of THBS1 gene were constructed, along with an empty luciferase vector for use as a control. Corresponding to the region in the WT THBS1, sequences predicted to bind to miR-221-3p, as well as a mutated sequence that cannot bind to miR-221-3p, were cloned into different plasmids, respectively, followed by transfection into HEK-293T cells using Lipofectamine 3000. A Dual-Luciferase Reporter Gene Detection kit (E1910, Promega, USA) was adopted to detect the activity of luciferase complying with the manual provided by the manufacturer 48 hours following co-transfection. Absorbance values were measured with a microplate reader (BioTek Synergy 2, USA). Each experiment was repeated three times.
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9

Evaluating miR-194 Regulation of CnA mRNA

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The 3'-UTR sequence of wild-type (wt-) CnA mRNA was amplified to the downstream site of the pGL4 luciferase vector (Promega, Madison, WI, USA). The rapid site-directed mutagenesis kit (D0206, Beyotime, Shanghai, China) was used to generate the mutated (mut-) CnA mRNA 3'-UTR. The H9c2 cells were seeded in a 24-well plate at a density of 3×104/well. After 24 hours, 1 µg of wt-CnA mRNA 3'-UTR or mut-CnA mRNA 3'-UTR luciferase plasmid, 50 nM miR-194 mimic or miR-194 NC, and 150 ng of Renilla luciferase plasmid (Beyotime, Shanghai, China) were transfected into cells via LipofectamineTM 2000. The cells were then incubated at 37 ℃ for 36 hours. The dual luciferase reporter gene detection kit (Promega, Madison, WI, USA) was used to detect luciferase activity according to the manufacturer’s protocol. All data were normalized to Renilla luciferase activity.
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10

Dual-Luciferase Assay for miRNA Target Validation

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The wild-type and mutant 3’-UTR DNA fragments of SOCS5 covering the predicted binding sites of gga-miR-365-3p were successfully cloned. The psiCHECK™-2-SOCOS-3’UTR (wild type and mutant) vector was constructed by combining the luciferase vector psi-CHECK™-2 (Promega, Madison, WI, USA) with SOCOS 3’-UTR (wild type and mutant).
Dual-luciferase reporter assay, as we have reported before [19 (link)]. In a nutshell, when cells reached 80–90% confluence, using Lipofectamine 2000 (Invitrogen Life Technologies, USA) each co-transfected cells with wild-type or mutant reporter plasmid (200 ng) and 10 pmol of the indicated RNA oligonucleotides. Then, the luciferase activity in each group was detected using an automatic microplate reader (Bio-Rad, Hercules, CA, USA) in accordance with the dual luciferase reporter gene detection kit instructions (Promega, Madison, WI, USA) according to the manufacturer’s protocol.
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