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24 protocols using dorsomorphin

1

Efficient Neural Progenitor Cell Generation

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The procedure to generate neural progenitor cells (NPCs) was adapted from Reinhardt et al. [49 (link)] and is described in detail in Grochowska et al. [11 (link)]. Briefly, iPSCs were detached and cultured as embryoid bodies in suspension in a shaker. Neural induction was initiated by promoting Wnt and Shh signalling with the addition of SB431542 (Tocris, 1614), dorsomorphin (Abcam, ab120843), CHIR (Sigma-Aldrich, SML1046), and Purmorphamine (Stem Cell Technologies, 72,202). Embryoid bodies showing neuroepithelial development were selected, dissociated, and plated on Matrigel® (Corning, 356238)-coated plates as NPCs. From the sixth passage, NPCs were kept in NPC medium, consisting of N2B27 medium (DMEM/F-12—Neurobasal in 1:1 ratio, 1% B27 w/o Vitamin A, 0.5% N2, 1% Penicillin–Streptomycin, all from Thermo Fisher Scientific) supplemented with 3 μM CHIR, 200 μM ascorbic acid (AA, Sigma-Aldrich, A92902), and 0.5 μM Smoothened Agonist (SAG, Abcam, ab142160). Cells were kept on Matrigel-coated plates, refreshed every other day, and split with accutase (Sigma-Aldrich) in a 1:10–1:20 ratio.
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2

AMPK Signaling Pathway Analysis

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Antibodies against GAPDH (sc-25778) were purchased from Santa Cruz Biotechnology. Antibodies against phospho-ACC (Ser79) (CST3661), phospho-AMPKα (Thr172) (CST2535) and total AMPK (CST2532) were purchased from Cell Signaling Technology. Bis-Tris 4–12% polyacrylamide gels (345–0123), MES running buffer (161–0789) and horseradish peroxidase secondary antibody conjugate (170–6515) were obtained from Bio-Rad. Polyvinylidene Fluoride (PVDF) Immobilon-P membrane (IPVH00010) was manufactured by Merck Millipore. Protein molecular weight marker (RPN800E) was purchased from GE Healthcare Life Sciences, while enhanced chemiluminescence (ECL) reagent (32209) and BCA protein assay were purchased from Life Technologies. Metformin was obtained from Calbiochem (Merck Millipore), 2-deoxy-D-glucose from Sigma-Aldrich and Compound C (Dorsomorphin) and A-769662 from Abcam. All other reagents, unless otherwise specified, were purchased from Sigma-Aldrich or Merck Millipore.
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3

Osteogenic Differentiation Assay with Dorsomorphin

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The BMP/Smad signaling inhibitor dorsomorphin (Abcam) was first dissolved in dimethyl sulfoxide (DMSO, Sigma) and then diluted in the medium described below (1:1 000). DMSO diluted in medium (1:1 000) was used as the vehicle. Similar to the procedure used for the osteogenic differentiation assay, BMSCs were cultured in rhBMP2-supplemented osteogenic medium (αMEM supplemented with 10 mmol·L−1 β-GP, 50 μg·mL−1 AA2P, 10 nmol·L−1 DXA, 100 ng·mL−1 rhBMP2, 10% FBS, and 1% A/A) containing DMSO (vehicle) or dorsomorphin (4 μmol·L−1). Real-time PCR and ALP staining were performed on day 7.
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4

Characterization of cinnamic acid

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Trans-cinnamic acid (99% purity, Figure 1A) was purchased from Sigma Chemical Co. (St. Louis, MO, USA). BRL 37344 and L-748.337 were purchased from Tocris Bioscience (Bristol, UK). AICAR was purchased from TCI (Chuo-ku, Tokyo, Japan). Dorsomorphin was purchased from Abcam (Cambridge, UK). All other chemicals used in this study were of analytical grade.
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5

Modulating TGFβ and BMP Signaling

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Inhibition of TGFβ and/or BMP signaling was performed using the small molecule inhibitors, SB431542 (Torcris Biosciences, Bristol, United Kingdom) and Dorsomorphin (Abcam, Cambridge, United Kingdom), respectively. Inhibitors were added in culture with a final concentration of 5 μM during medium change.
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6

Cortical Spheroid Differentiation from hESCs/hiPSCs

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Three-dimensional differentiation of hESCs and hiPSCs into cortical spheroids was performed as described previously43 (link). Briefly, confluent, undifferentiated colonies of hESCs were removed from MEFs using collagenase. Colonies were washed once with media and suspended in hESC media without FGF2, supplemented with 10 μm Y-27632 and plated into 6-well low attachment plates (Corning: 3471). On days 1-5, media was changed to hESC-FGF2 media, supplemented with 10 μm Dorsomorphin (Abcam: ab146597) and 10 μm SB431542. On day 6, developing spheroids were put into neural induction media composed of Neurobasal-A (ThermoFisher: 10888022), B-27 Supplement–A (ThermoFisher: 12587-010), PenStrep, and Glutamax, supplemented with 20 ng/ml FGF and 20 ng/ml EGF. Media was changed in this manner every day from days 6-15 and then every other day until day 25. From days 25-43, the developing spheroids were grown in neural induction media supplemented with 20 ng/ml BDNF and 20 ng/ml NT-3, with media changes every 4 days. From day 43 on, spheroids were maintained in neural induction media without BDNF or NT-3, with media changes every 4 days until harvest.
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7

Isolation and Synthesis of Mandelalides

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The recollection and isolation of natural product mandelalides from Algoa Bay, South Africa and total syntheses of mandelalides A and L have been described previously [4 (link),9 (link),60 (link)]. NMR data for mandelalides tested here are included in [4 (link)] (natural products) and 61 (synthetic products), and were acquired at the start of this study; integrity of all mandelalide compounds was also routinely confirmed by LC-MS. Oligomycin A was purchased from Santa Cruz Biotech (Dallas, TX, USA). Dorsomorphin was purchased from Abcam (Cambridge, UK). Paclitaxel and salinosporamide A (marizomib) were purchased from Sigma Aldrich (St. Louis, MO, USA). Erlotinib was purchased from Enzo Life Sciences (Farmingdale, NY, USA). All chemicals were reconstituted in 100% DMSO, aliquoted and stored in amber borosilicate glass vials at −20 °C for use in biological studies. Cell culture-grade DMSO was used as the vehicle for all treatments, and final concentrations of DMSO for in vitro experiments never exceeded 0.1%. Primary and secondary antibodies were from Cell Signaling Technology, Inc. (Danvers, MA, USA). Specific codes were as follows: AMPK (#5831), pAMPKα T172 (#50081), ACC (#3676), pACC S79 (#11818) and GAPDH (#5174). General laboratory reagents were from VWR International (Radnor, PA, USA).
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8

Osteogenesis of Diabetic BMSCs

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BMSCs were induced for osteogenesis following our previously published protocol 28. Briefly, cells were trypsinized, seeded at a density of 5,000 cells per cm2, and induced for osteogenesis by medium composed of low‐glucose DMEM, 10% FBS, 1% penicillin and streptomycin, 10 mM β‐glycerophosphate, 50 μg/ml μM l‐ascorbic acid‐2‐phosphate, 0.1 μM dexamethasone, and 10 nM 1α,25‐dihydroxyvitamin D3 (Sigma–Aldrich, St. Louis, MO). The induction medium was changed every 3 days.
To determine if TGFB and/or bone morphogenetic protein (BMP) signaling involved in the regulation of osteogenesis of BMSCs are affected by diabetes, the cell from T1DM (T1DM‐BMSCs) and non‐T1DM donors (non‐T1DM‐BMSCs) were treated with 5 μM of dorsomorphin, an inhibitor of BMP type 1 receptor kinase, and/or 5 μM of SB431542, an inhibitor of TGFB receptor kinase (Abcam, Cambridge, MA) during 21‐day osteogenic differentiation.
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9

BMP Pathway Inhibition Protocol

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Overall, 100 mM stock solution of IM (Stratech) was prepared in water and stored at 4 °C; BMP pathway inhibitors LDN-193189 (LDN) (Cellagen technology) and Dorsomorphin (DOR) (Abcam) were prepared using DMSO and 10 mM stocks stored at −20 °C. Inhibitors were diluted in complete media as required. LDN interrupts the BMP pathway through inhibiting AVCR1 (ALK2) and BMPR1A (ALK3), receptor phosphorylation, whereas DOR inhibits AVCR1 (ALK2), BMPR1A (ALK3), BMPR1B (ALK6), thereby preventing phosphorylation of SMADs 1, 5 and 8, and transcription of downstream genes.
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10

Metabolic Regulation in HeLa Cells

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HeLa cells were trypsinized, washed in PBS, and seeded in glucose or galactose-containing media in the presence of DMSO or 2 μM Compound C (Dorsomorphin, Abcam). Cells were imaged after 16 hr.
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