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14 protocols using lowicryl hm20 resin

1

Brain-Wide Fluorescence Imaging Protocol

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4–6 weeks after virus injection, brains were dissected and post-fixed in 4% paraformaldehyde for 24 hr at 4°C. The brains were rinsed in 0.01 M PBS (Sigma-Aldrich) three times (for 2 hr each) and embedded in Lowicryl HM20 resin (Electron Microscopy Sciences, 14340). We use a fluorescence micro-optical sectioning tomography (fMOST) system to acquire the brain-wide image dataset at high resolutions (0.23 × 0.23 × 1 μm for 10 brains and 0.35 × 0.35 × 1 μm for the other nine brains). Embedded brain samples were mounted on a 3D translation stage in a water bath with propidium iodide (PI). The fMOST system automatically performs the coronal sectioning with 1 um steps and imaging with two color channels in 16-bit depth. The green channel of GFP is for visualization of neurons and the red channel of PI counterstaining is for visualization the whole brain cytoarchitecture.
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2

Immunolabeling of High-Pressure Frozen Samples

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For immunolabeling of high-pressure frozen samples, the freeze substitution medium consisted of anhydrous acetone containing 0.2% uranyl acetate in the AFS unit as described above at − 90 °C for 4 days, followed by slow warming to − 50 °C over a period of 2 days. After rinsing in several acetone washes, samples were infiltrated in Lowicryl® HM20 resin (MonoStep HM20 resin, Electron Microscopy Sciences, Hatfield, United States) at − 50 °C, polymerized under UV light, and subsequently sectioned. Ultrathin sections (82 nm) were cut as above and were collected onto carbon-collodion-coated 200-mesh grids. A solution of caveolin antibody diluted at 1/75 and of a goat anti-mouse conjugated with 5-nm colloidal gold diluted 1/25 (secondary antibody) were successively applied prior to TEM observations. These observations were carried out using an electron microscope (HITACHI H7800, Japan) as described above.
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3

GABAAR Subunit Localization in Fmr1 Mice

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Three pairs of Fmr1 WT and KO animals were prepared for postembedding immunogold labeling for the α4 and δ subunits of GABAARs, as described previously (Zhang et al., 2007 (link)). Following perfusion of the animals with 4% paraformaldehyde and 0.1% glutaraldehyde, brain sections were cut coronally at 0.5–1 mm with a razor blade, and small blocks of the dentate gyrus were trimmed from these sections. Specimens were cryoprotected, frozen at −190°C in a cryofixation unit (EM CPC; Leica Microsystems), and then transferred to a cryosubstitution unit (EM AFS; Leica), which was programmed for all subsequent steps (Zhang et al., 2007 (link)). Specimens were immersed in 4% uranyl acetate (Electron Microscopy Sciences), dissolved in anhydrous methanol for 24 h at −90°C, rinsed in methanol at −45°C, and infiltrated with Lowicryl HM20 resin (Electron Microscopy Sciences) for 48 h at −45°C. The resin was polymerized with ultraviolet light (360 nm) for 24 h at −45°C and then warmed in 4°C steps to 0°C.
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4

Freeze Substitution and Low-Temperature Embedding

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Freeze substitution and low-temperature embedding of the 400-μm sections were performed as previously described (Wang et al., 2010 (link); Crimins et al., 2016 ). Briefly, after the sections were cryoprotected by immersion in increasing concentrations of glycerol in PB, they were plunged in liquid propane cooled by liquid nitrogen in a Universal Cryofixation System KF80 (ReichertJung). Then the sections were immersed in 1.5% uranyl acetate in anhydrous methanol (−90°C) for 24 hr in a cryosubstitution Automatic Freeze Substitution System (Leica) and the temperature was raised 4 °C/h from −90 to −45 °C. After washing with anhydrous methanol, the sections were infiltrated with increasing concentrations of Lowicryl HM20 resin (Electron Microscopy Sciences) for 1 hr each, followed by pure Lowicryl overnight. The resin was polymerized with UV light (360 nm) at −45 °C for 48 hr, followed by room temperature for 24 hr. Seven or more consecutive ultrathin sections were cut into 90 nm-thick sections with a Diatome diamond knife (Electron Microscopy Sciences) and mounted on each formvar-supported slot grid (Electron Microscopy Sciences).
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5

Immunogold Labeling of Cochlear Ultrastructure

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Post-embedding immunogold labeling was performed as described (Petralia and Wenthold, 1999 (link)) with minor modifications. Cochleae were perfused with 4% paraformaldehyde and 0.25% glutaraldehyde in PBS, cryoprotected in 30% sucrose, freeze-substituted and embedded in Lowicryl HM-20 resin (Electron Microscopy Sciences). Ultrathin sections were cut using an Ultracut UCT (Leica), collected on nickel grids and treated with 0.1% sodium borohydride with 50 mM glycine in TBST, incubated in 10% NGS in TBST, followed by overnight incubation at 4C in primary antibody (PB886) diluted in 1% NGS/TBST. After washing in TBST, grids were blocked in 1% NGS/TBST for 10 min followed by incubation using 1:20 dilution of goat F(ab)2 anti-rabbit IgG conjugated to 10 nm gold particles (Ted Pella Inc., Redding, CA) in 1% NGS and 0.5% polyethylene glycol (20,000 MW) in TBST for 1 hr at room temperature. Finally, sections were stained with 1% uranyl acetate and 0.3% lead citrate and examined using a JSM-1010 TEM microscope (JEOL).
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6

Postembedding Immunogold Labeling for δ Subunit

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Tissue from a normal DOCK10-Cre mouse and two pilocarpine-treated mice with unilateral δ-eGFP subunit transfection was prepared for postembedding immunogold labeling for the δ subunit, as described previously (Zhang et al., 2007 (link)). Following perfusion of the mice with 4% paraformaldehyde and 0.1% glutaraldehyde and removal of the brain, coronal sections of the forebrain that included the hippocampus were cut at 200 μm on a vibratome (VT1000S; Leica Microsystems), and small blocks of the dentate gyrus were trimmed from these sections. These specimens were cryoprotected, frozen at −190 °C in a cryofixation unit (EM CPC; Leica Microsystems), and then transferred to a cryosubstitution unit (EM AFS; Leica) which was programmed for all steps. Specimens were subsequently infiltrated with Lowicryl HM20 resin (Electron Microscopy Sciences), and the resin was polymerized as described previously.
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7

Ultrastructural Localization of Proteins

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Transfected cell cultures (2.5 h and 5 h) were vitrified using an EMPact2 high-pressure freezer (Leica) and freeze substituted in a temperature-controlling device (Reichert AFS) into Lowicryl HM20 resin (Electron Microscopy Sciences, Pennsylvania) following the protocol of Hawes et al. (63 (link)). The freeze substitution medium contained 2% (wt/vol) uranyl acetate, 0.25% glutaraldehyde, 10% (vol/vol) dry methanol, 89% dry acetone, and 1% water. Double labeling was performed on ultratyin sections mounted on Formvar-coated copper grids using anti-GFP antibody labeled with rabbit anti-goat 6-nm gold particles (EMS) and anti-J2 antibody labeled with donkey anti-mouse (10 nm; EMS).
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8

Immunogold Labeling for Electron Microscopy

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Electron microscopy (EM) and immunogold labeling was performed as previously described [18 (link), 22 ] at the Yale School of Medicine’s Center for Cellular and Molecular Imaging. Briefly, cells were fixed by high-pressure freezing (Leica EM HPM100) and freeze substitution (Leica AFS) was carried out at 2,000 pounds/square inch in 0.1% w/v uranyl acetate/acetone. Samples were infiltrated into Lowicryl HM20 resin (Electron Microscopy Science) and sectioned onto Formvar/carbon-coated nickel grids for immunolabeling.
Samples were blocked in 1% w/v fish skin gelatin, then incubated with primary antibodies diluted 1:50 in blocking buffer. 10 nm protein A-gold particles (Utrecht Medical Center) were used to detect the primary antibodies and grids were stained with 2% w/v uranyl acetate and lead citrate. Images were captured with an FEI Tecnai Biotwin TEM at 80Kv equipped with a Morada CCD and iTEM (Olympus) software.
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9

Postembedding Immunogold Labeling for δ Subunit

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Tissue from a normal DOCK10-Cre mouse and two pilocarpine-treated mice with unilateral δ-eGFP subunit transfection was prepared for postembedding immunogold labeling for the δ subunit, as described previously (Zhang et al., 2007 (link)). Following perfusion of the mice with 4% paraformaldehyde and 0.1% glutaraldehyde and removal of the brain, coronal sections of the forebrain that included the hippocampus were cut at 200 μm on a vibratome (VT1000S; Leica Microsystems), and small blocks of the dentate gyrus were trimmed from these sections. These specimens were cryoprotected, frozen at −190 °C in a cryofixation unit (EM CPC; Leica Microsystems), and then transferred to a cryosubstitution unit (EM AFS; Leica) which was programmed for all steps. Specimens were subsequently infiltrated with Lowicryl HM20 resin (Electron Microscopy Sciences), and the resin was polymerized as described previously.
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10

Correlative Light and Electron Microscopy

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Live fluorescent cells seeded in 35-mm tissue culture dishes were fixed in CLEM fixative, collected with a 20% (w/v) BSA solution and assembled into the HPF specimen carrier (Type A, 0.1/0.2 mm; Type B, flat; Techno Trade). The carrier assembly was then introduced into the sample holder and frozen in the HPF machine per the manufacturer’s instructions (Wohlwend HPF Compact 01 High-Pressure Freezer; Techno Trade). Cell tissue was then freeze-substituted, osmicated with a 1% OsO4 (w/v) solution, dehydrated in 100% (w/v) acetone and embedded in Lowicryl HM20 resin (Electron Microscopy Sciences). After the resin was polymerized using UV lamp exposure, plastic blocks were cut into 100-µm sections for both toluidine blue staining and fluorescence visualization. Cells were mounted on glass slides using antifade mounting medium (Invitrogen).
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