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4 protocols using biotin blocking solution

1

Alpha-Gal Epitope Detection in Skin

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The alpha-gal epitope was labelled using biotinylated GSL-1 – isolectin B4 (GSL-1 Lectin; Vector laboratories). Three samples of cellular split-thickness porcine skin, decellularised porcine dermis and decellularised human dermis from three pigs and three human donors were analysed. Paraffin wax sections (5 μm) were dewaxed in xylene and rehydrated through a graded series of alcohols to water. Antigen unmasking was performed by immersing sections in preheated antigen unmasking solution (Vector laboratories) at 95°C for 25 min. Each section was then covered with streptavidin blocking solution and biotin blocking solution (Vector laboratories), each for 15 min. Non-specific binding was then blocked using CarboFree blocking solution (Vector laboratories) for 30 min. GSL-1 Lectin was diluted to 5 μg/mL, added to each section and incubated for 30 min at room temperature. To control sections, galactose-blocked lectin at the same GSL-1 Lectin concentration (5 μg/mL) was added. This was prepared by diluting GSL-1 Lectin in galactose blocking solution (200 mM, 0.1% sodium azide). GSL-1 Lectin was then visualised using streptavidin horseradish peroxidase and ImmPACT DAB detection method.
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2

SARS-CoV-2 Spike Protein Binding Assay

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Wells of a white streptavidin-coated 96-well plate (Thermo Fisher Scientific) were washed and blotted three times with SELEX WB then incubated with 50 nM biotinylated NS or SNAP1 aptamer at 4°C for 30 min. After three washes with wash buffer (0.1% Tween-20 2% BSA SELEX), wells were incubated with blocking buffer (5% BSA, 1:100 biotin blocking solution (Vector Laboratories), 0.1 mg/mL tRNA, 0.1 mg/mL SS DNA, 0.1% Tween-20 SELEX WB) for 1.5 h at room temperature. Subsequently, the wells were incubated with S protein, UV-inactivated SARS-CoV-2 virus, or lentivirus in binding buffer (2% BSA, 0.1 mg/mL tRNA, 0.1 mg/mL SS DNA, 0.1% Tween-20 SELEX WB) for 30 min at room temperature. Then wells were washed four times before incubation with an anti-SARS-CoV-2 antibody with HRP (Novus Biologicals cat. no. NBP2–90980H). Lastly, wells were washed six times. All steps use 100 μL of the solution, except washing (200 μL of solution.) For wash steps, the plate is flicked over a sink then blotted dry. Ice-cold ELISA Femto Substrate (Thermo Fisher Scientific) was added, and the plate luminescence was immediately measured by Infinite 200 PRO plate reader (Tecan) with 250 nm integration time and automatic attenuation.
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3

Immunohistochemical Staining of Tissue Sections

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Tissue sections were deparaffinized and rehydrated, endogenous peroxidase activity neutralized and antigens retrieved by boiling in sodium citrate solution (Vector Labs H-3300). Sections were blocked in 2% bovine serum albumin (BSA)/10% normal serum (same species of secondary antibody) and avidin-blocking solution (Vector) in phosphate-buffered saline (PBS), incubated with primary antibody in 2% BSA/10% normal serum and biotin-blocking solution (Vector) in PBS, incubated with biotinylated secondary antibody 1:500 (Vector), incubated with ABC (Vector PK-6100) or ABC-AP reagent (Vector AK-5000), incubated with DAB/substrate/chromogen system (Dako K3467; brown) or AP substrate kit I (Vector SK-5100 reagent, red) and counterstained with hematoxylin (Vector H-3404). Specificity of staining was confirmed by omission of the primary antibody. Images were obtained using a digital microscope (COOLSCOPE, Nikon). Primary antibodies used included anti-β-catenin (Santa Cruz sc-7963, 1:250 dilution), anti-α-SMA (Sigma A2547, 1:200 dilution), anti-Sm22α (Abcam 14106, 1:500 dilution), anti-CD31 (Abcam 28364, 1:50 dilution) and anti-pHH3 (Cell Signaling 9701, 1:50 dilution).
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4

Biotin-Blocking and DNA Aptamer Labeling

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To mask endogenous biotin, sections were treated with biotin-blocking solution (Vector laboratories, UK) for 30 minutes and then washed three times with 0.1 M PBS, pH 7.4. To eliminate non-specific DNA binding, sections were blocked with 100 μg/ ml salmon sperm DNA for 30 minutes at room temperature. The tissue slides were incubated with 100 nM biotin labelled DNA aptamers for 60 minutes at room temperature and then washed three times with 0.1 M PBS, pH 7.4 for 5 minutes followed by incubation with Vectastain ABC reagent for 30 minutes at room temperature. After three washes with 0.1 M PBS, pH 7.4, the tissues sections were treated with 200 μl of DAB peroxidase substrate solution (Vector laboratories, UK) for 5 minutes at room temperature for colour development. Counterstaining of the cell nuclei in tissue sections was performed with Mayer’s haematoxylin solution for 5 minutes. The slides were then rinsed with distilled water and dehydrated through increasing series of ethanol washes (70%, 90% and 100% two times for 2 minutes each). The sections were placed into xylene for 5 minutes and mounted in DPX mounting medium and were then imaged and captured using bright field microscopy using Nikon microscope equipped with digital eclipse camera system (Nikon, UK).
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