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5 protocols using leupeptin hemisulfate

1

In vivo Autophagy and Signaling Assays

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For in vivo autophagic flux assays, 8-week old wild-type mice were injected with 40 mg/kg leupeptin hemisulfate (21 (link)) (Sigma-Aldrich, St. Louis, MO) or with saline intraperitoneally one hour prior to orogastric gavage with saline or with 3 g/kg trehalose in saline. Mice were killed two hours after orogastric gavage, and livers were rapidly dissected and snap-frozen in liquid nitrogen prior to homogenization in ice-cold RIPA lysis buffer and immunoblot analysis. Throughout the experiment, mice were given ad libitum access to standard rodent chow and water.
For in vivo signaling assays, 8-week old wild-type mice were subjected to orogastric gavage with 3 g/kg trehalose dissolved in saline. Mice were killed 0.5–4 hours after gavage, and livers were rapidly dissected and snap frozen in liquid nitrogen prior to homogenization in ice-cold RIPA lysis buffer and immunoblot analysis. Control mice were gavaged with saline alone and killed 0.5 hours post-gavage. They are labeled as “0 hour” trehalose exposure.
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2

Immune Cell Signaling Pathway Analysis

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Lymphoprep™ gradient was purchased from Progen (Heidelberg, Germany). RPMI 1640 medium, fetal calf serum, trypsin 10x (25 mg/mL), trypsin-EDTA 10x (5 mg/mL trypsin and 2.2 mg/mL EDTA), and phosphate buffered saline (PBS, without Ca and Mg) were from PAA Laboratories Gmbh (Coelbe, Germany). L-Glutamine, penicillin, and streptomycin were from Invitrogen (Karlsruhe, Germany). Camptothecin was from Tocris (Eching, Germany); Triton-X 100, milk powder, and N,N,N′,N′-tetramethyl-1-,2-diaminomethane (Temed) were from Carl Roth (Karlsruhe, Germany); DMSO, lipopolysaccharide (LPS), phorbol, 12-myristate 13-acetate, CFSE, ammonium persulfate, bovine serum albumin, ethanol absolute, hydrochloric acid (37%), leupeptin hemisulfate, p-coumaric acid, pepstatin A, Ponceau S, trypan blue, Tween 20, and ionomycin were from Sigma-Aldrich (Taufkirchen, Germany).
Antibodies against p-38 (Thr180/Tyr182), p-ERK1/2 (Thr202/Tyr204), p-JNK, and p-c-Jun (Ser73) and the horseradish peroxidase- (HRP-) labelled secondary antibodies, anti-mouse and anti-rabbit, were from Cell Signaling Technology (Boston, USA); anti-human COX-2 was from R&D Systems (Wiesbaden, Germany); anti-human COX-1 and anti-human 5-LOX (mouse monoclonal, clone 33) were from Santa Cruz Biotechnology (Heidelberg, Germany); and mAb against β-actin was from Sigma-Aldrich (Taufkirchen, Germany).
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3

Urine Exosome Isolation by Ultracentrifugation

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Exosomes were isolated by step-wise ultracentrifugation as previously reported [11 (link),21 (link)] with a few modifications. Briefly, urine samples (≥30 mL) were collected by simple voiding and protease inhibitor (combination of 4-(2-aminoethyl) benzenesulfonyl fluoride hydrochloride (AEBSF-HCl, Sigma-Aldrich, St. Louis, MO, USA), leupeptin-hemisulfate (Sigma-Aldrich, St. Louis, MO, USA), and NaN3 (Sigma-Aldrich, St. Louis, MO, USA)) were immediately added. To remove urinary sediments, the samples were centrifuged at 4000 rpm for 15 min at 4 °C and the resulting supernatants were collected and stored at −80 °C until exosome extraction. Frozen urine samples (15 mL) were thawed and vortexed for 1 min, centrifuged at 17,000 g for 15 min at room temperature, and the resulting supernatant was collected and ultracentrifuged at 200,000 g for 70 min at room temperature using a Beckman Coulter Optima L-80xp ultracentrifuge, rotor SW40Ti (Beckman Coulter; Brea, CA, USA). The resulting supernatant was discarded and the pellet was dissolved in 11 mL DPBS for washing, which was ultracentrifuged again at 200,000× g for 70 min at room temperature. The supernatant was discarded and the resulting pellet of exosomes was used for protein isolation or quantification of exosome particles.
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4

Purified TEP1 Trypsin Cleavage

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Purified TEP1 was cleaved using bovine pancreatic trypsin (Sigma) at a 1:20 molar ratio to TEP1 in 0.2 M NaCl and 20 mM HEPES pH 7.5. Samples were incubated for 5 min at 37°C, then placed on ice and diluted 2-fold with 20 mM HEPES pH 7.5, 0.2 mM Leupeptin hemisulfate (Sigma), and 0.2 mM soybean trypsin-chymotrypsin inhibitor. Samples were immediately repurified on a Mono S 5/50 cation exchange column (GE Healthcare).
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5

Porcine Intestinal Cytokine Analysis

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Porcine specific kits for the analyses of TNF-α, IL-6 and IL-10 cytokine contents in the intestinal tissues and plasma samples were purchased from Quantikine (R&D Systems Inc., Minneapolis, MN, USA). Crude tissue homogenate was prepared by homogenizing 0.5 g of jejunal and colonic tissues with a Powergen 125 hand-held tissue homogenizer (Fisher, Pittsburgh, PA, USA) in 1 ml of Hank's buffer of balanced salt mixture without phenol red, calcium and magnesium (HyClone, Logan, UT, USA) but with 1 µl of protease inhibitor cocktail. The cocktail included the following protease inhibitors (mM): 0.02 N-tosyl-L-phenylalanine chloromethyl-ketone; 0.02 N-α-p-tosyl-L-lysine ketone; 0.02 leupeptin hemisulfate; 0.02 apoprotinin; 0.02 pepstatin A and 0.1 PMSF (Sigma/Aldrich). The homogenate was immediately centrifuged at 12000 g at 4 °C and 100 µl of the supernatant (about 0.8 mg protein/sample) was used to initiate the ELISA incubation according to the instructions on the specific kit and absorbance was read by using a BioRad Model 550 Microplate reader (BioRad, Hercules, CA, USA). Protein contents in the supernatant and plasma samples were measured by using a Bio-Rad commercial kit (Lackeyram et al. 2010) .
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