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174 protocols using urea

1

Insect-mediated Feedstock Bioconversion

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Feedstock samples were amended with distilled water and urea (Fisher Scientific Company LLC, Hampton, NH, USA) to achieve a target C/N ratio of 26.5 urea was used as a model nitrogen source because urea could be obtained consistently and distributed uniformly throughout the feedstocks. Prior to incubation, three random samples from each mixture were collected to measure pH and moisture content as previously described.5The experiment was designed as a randomized block design. There were four replicates for each treatment inoculated with larvae and three replicates for non‐inoculated treatments. Incubations were completed over 14 days in bioreactors as previously described.5
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2

Purification of His-Tagged Proteins

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An equal number of cells was lysed in 1 ml of guanidinium lysis buffer
(6M guanidinium-HCl, 0.1M Na2HPO4 (Sigma)/NaH2PO4 (Fisher)
pH 8.0, 0.01 M Tris pH 8.0, 5mM imidazole, 10mM β-mercaptoethanol
(Fisher)). Lysates were incubated with 45 μl of Ni2+-NTA-agarose
beads (Thermo Scientific) for 4 hrs at room temperature by end-over-end
rotation. The beads were washed with the following buffers: guanidinium buffer
(6M guanidinium-HCl, 0.1 M Na2HPO4/NaH2PO4 pH 8.0, 0.01 M
Tris pH 8.0, 10 mM β-mercaptoethanol); urea pH 8 buffer (8M urea
(Fisher), 0.1 M Na2HPO4/NaH2PO4 pH 8.0, 0.01 M Tris pH
8.0, 10 mM β-mercaptoethanol); buffer A (8M urea, 0.1 M
Na2HPO4/NaH2PO4 pH 6.3, 0.01 M Tris pH 6.3, 10 mM
β-mercaptoethanol) plus 0.2% Triton-X 100 (Acros); buffer A;
buffer A plus 0.1% Triton X 100. Proteins were eluted with 200 mM
imidazole in 5% SDS (Fisher), 0.15 M Tris pH 6.7, 30% glycerol
(Fisher), 0.72M β-mercaptoethanol. Samples were then subjected to
SDS-PAGE and Western blotting.
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3

Synthesis and Analysis of Glucose Derivatives

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3-mercaptophenylboronic acid (3-MPBA) (≥95%), 3-hydroxythiophenol (3-HTP) (≥96%), D-(+)-glucose (≥99.5% GC grade), D-(−)-fructose (≥99%), L-glutamine (≥99%), phorbol 12-myristate 13-acetate (PMA) (≥99%) and sodium hypochlorite (5% w/w) are purchased from Sigma-Aldrich. D-(+)-galactose (≥98%), D-(+)-mannose (≥99%), urea (≥99%), sodium bromide (≥99%), sodium nitroprusside (≥98%), hydrogen peroxide (35% w/w), tert-butyl hydroperoxide (TBHP) (70% w/w), calcium sulfate dehydrate (≥98%) and sodium dihydrogen phosphate (≥98%) are purchased from Alfa Aesar. D-(+)-sucrose (≥99%), creatinine (≥99%) is purchased from TCI. Glucose oxidase from aspergillus and sodium chloride (≥99%) are purchased from VWR. Iron (II) chloride tetrahydrate (≥99%) is purchased from JT Baker. Magnesium sulfate (≥98%) is purchased from EMD Millipore. Potassium chloride (≥99%) is purchased from Acros Organics. Ultrapure water is obtained from a Millipore water system. Citrate-capped gold nanoparticles (60 nm, 5.2×10−11 M) are purchased from Nanopartz. Normal human serum is purchased from UTAK Laboratories. Artificial urine is made from 55 mM sodium chloride, 67 mM Potassium chloride, 2.6 mM calcium sulfate, 29.6 mM sodium sulfate, 3.2 mM Magnesium sulfate, 19.8 mM sodium dihydrogen phosphate, 9.8 mM creatinine and 310 mM urea.
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4

Facile Synthesis of Rhodamine-Doped CeO2

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Pristine CeO2 powder (Sigma-Aldrich), urea (98%, Alfa Aesar), rhodamine-B (Alfa
Aesar), FeSO4 (98.5%, Junsei Chem.), H2O2 (30 wt %, DaeJung Chem.), and N2 gas (99.999%,
Deokyang Korea) were purchased and used as received.
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5

Synthesis of Metal Coordination Complexes

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Boric acid (H3BO3, 99.97%), urea (NH2CONH2, 99.3+%), d-(+)-glucose (99%), calcium nitrate tetrahydrate (Ca(NO3)2·4H2O, 99%), magnesium nitrate hexahydrate (Mg(NO3)2·6H2O, 98.0–102.0%), strontium nitrate (Sr(NO3)2, 99.0+%), barium nitrate (Ba(NO3)2, 99.95%), silver nitrate (AgNO3, 99.9+%), nickel(ii) nitrate hexahydrate (Ni(NO3)2·6H2O, 98%), 2,2′-bipyridine (99+%), lanthanum(iii) oxide (La2O3, 99.99%) were purchased from Alfa Aesar. Cobalt nitrate hexahydrate (Co(NO3)2·6H2O, 99%) was purchased from Aladdin and cobalt chloride (CoCl2·6H2O, 99.99%) from MACKLIN.
Other analytical grade solvents including ethanol, acetonitrile and chemicals such as potassium hydroxide, ammonia solution, hydrochloric acid and triethanolamine were supplied by Sinopharm.
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6

Synthesis of Nitrogen-Doped Graphene

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Potassium ferrocyanide-K4[Fe(CN)6] and potassium chloride (KCl) were purchased from Merck (Germany). N,N-dimethylformamide (DMF) was bought from Sigma-Aldrich (Germany). 8-hydroxy-2’-deoxyguanosine (8-OHdG) was purchased from the Cayman Chemical Company. For the synthesis of nitrogen-doped graphene the following chemicals were used: graphene oxide, prepared using a modified Hummers method as previously reported [42 (link)], and urea (Alfa-Aesar, Germany).
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7

Protein Sample Preparation Protocol

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All standard proteins, ammonium acetate (NH4Ac),
dithiothreitol (DTT), iodoacetamide (IAA), and Microcon-30 kDa centrifugal
filter units for buffer exchange were purchased from Sigma-Aldrich (St. Louis,
MO). LC/MS grade water, methanol, formic acid (FA), and acetic acid (AA) were
purchased from Fisher Scientific (Pittsburgh, PA). Urea was purchased from Alfa
Aesar (Tewksbury, MA). Hydrofluoric acid (HF) and acrylamide were purchased from
Acros Organics (Fair Lawn, NJ). The fused silica capillary (50
μm i.d., 360 μm o.d.) was
purchased from Polymicro Technologies (Phoenix, AZ).
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8

Monoolein-based Nanostructure Characterization

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Monoolein was purchased from Croda (Cithrol
GMO HP-SO-LK, purity >96%). Sodium hydroxide (Honeywell), hydrochloric
acid (Honeywell), urea (ultrapure 99%, Alfa Aesar), and urease (U4002–100
KU, Jack Beans, 100,000 units/g solid) were used as received. Methyl
formate (anhydrous, 99%), sodium phosphate monobasic, and sodium phosphate
dibasic were purchased from Sigma. All solutions were prepared using
Milli-Q water (18.2 MΩ cm–1, Millipore, Bedford,
MA). pH-adjusted 100 mM sodium phosphate buffer solutions were used
throughout the experiment.
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9

Synthesis and Characterization of Metal Oxide Nanoparticles

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Cobalt nitrate (CoNO3.6H2O), aluminum nitrate (AlNO3.9H2O), Zinc nitrate (ZnNO3.6H2O) bi-distilled water, urea, citric acid, trisodium salt, butyl alcohol, sodium hydroxide (NaOH), sodium nitrate (NaNO3), tween 20, sodium glycocholate, and oleic acid were purchased from Alfa Aesar, Germany. Essential oils of a commercially available jasmine oil blend consisting of Jasmine oil and Azores jasmine (J. sambac and J. azoricum, respectively) (Oleaceae) and peppermint (M. arvensis) (Lamiaceae) were bought from “Cap Pharm” EL CAPTAIN Company for extracting natural oils, plants, and cosmetics (El Obor, Cairo, Egypt); we would refer to the used oils as AJ and PP, respectively. All chemicals and essential oils were used without further purification or distillation.
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10

Synthesis of Metal Complexes

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All chemicals of reagent grade quality were obtained from commercial sources and used without further purification. CoSO4·6H2O (50.0 mmol), Ce(NO3)3·6H2O (50.0 mmol), NiSO4·6H2O (50.0 mmol), and CuSO4·5H2O (50.0 mmol) were purchased from Merck (Milipore, Darmstadt, Germany). 1-Hydroxyethane-1,1-diphosphonic acid, sodium hydroxide, 1-butyl-3-methylimidazolium trifluoromethanesulfonate, 1-butyl-3-methylimidazolium nitrate, 1-butyl-3-methylimidazolium chloride, 1-hexyl-3-methyl-imidazolium chloride, 2,6-dimethylphenol, and 4,4′-dihydroxybiphenyl were obtained from Sigma-Aldrich Chemie GmbH (München, Germany), and urea from Alfa Aesar (Karlsruhe, Germany).
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