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5 protocols using dnase solution

1

Decellularization of Lacrimal Glands

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LGs were decellularized as described previously.26 (link) In brief, LGs were cut into pieces 3 mm in diameter and washed in cold PBS (Sigma-Aldrich, St. Louis, MO, USA) containing 5% penicillin/streptomycin (P/S; Sigma-Aldrich) overnight. Cellular components were removed by incubation in a 1% (w/v) solution of sodium deoxycholate monohydrate (Sigma-Aldrich) for 36 hours with three changes, followed by DNase solution (200 U/mL in PBS; Roche, Basel, Switzerland) for 24 hours, and then washing in PBS + 5% P/S for an additional 24 hours. All incubation steps were performed at 4°C under continuous agitation with interposed washing in PBS + 5% P/S. The decellularized LGs were stored at −80°C until further use.
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2

Establishment of Ovarian Cancer Organoids

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Female NOG mice 7 weeks of age were obtained from Taconic, Denmark. 1,5 million human high-grade serous ovarian cancer OVC316 cells were injected into the uppermost mammary fat pads of the mice, after which tumor diameters were measured twice a week. When the diameters reached 12 mm, the mice were sacrificed, and the tumors were collected. Next, they were chopped into pieces and homogenized using mechanical force. The resulting pieces were digested with trypsin for 10 min in a 37oC tissue culture incubator while shaking, after which they were incubated for 1 h in a collagenase solution (10 mg/ml, Sigma-Aldrich) in organoid growth medium (DMEM/MEGM; GIBCO/Lonza) supplemented with 5 % FBS (GIBCO), 0.25 % penicillin and streptomycin solution (GIBCO) and 5 µg/ml insulin (Sigma-Aldrich). Next, pieces were pelleted by centrifugation for 10 min at 1500 rpm and digested in a DNAse solution (10 µg/ml, Roche) in DMEM/MEGM for 5 min at RT. Single cells were separated from organoids by differential centrifugation.
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3

Isolation and Cultivation of Astrocytes

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Postnatal days 1–2 neonates were sacrificed, and the cerebral hippocampus was removed. Tissues were incubated at 37°C for 15 min with DNase solution (Roche, Basel, Switzerland) and 0.25% trypsin (Gibco, Massachusetts, United States), dissociated and resuspended in DMEM containing 10% FBS (Gibco). Astrocytes were cultivated in T75 flasks (Falcon, Corning, United States) and purified by shaking for 24–48 h from 10–13 days in vitro (DIV 10–13). Astrocytes at DIV 16 were transduced with shRNAmiR AAV for ex vivo experiments. For in vitro experiments, 200,000 astrocytes were cultivated on top of sterile coverslips in 12-well plates (Thermo Fisher Scientific).
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4

Isolation of Immune Cells from Murine Tissues

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If staining of lymphocytes in blood was necessary, a few drops of blood were collected by submandibular bleeding into tubes containing 10–20μl of EDTA. After euthanizing mice, lymph nodes and spleens were removed and homogenized using 70-μm cell strainers. Spleens and blood were treated with red blood cell lysing solution (Sigma-Aldrich) for 3min at room temperature. Cell numbers were counted with trypan blue using Kova counting chambers. Livers and lungs were harvested, cut in small pieces, and incubated with 100μg/ml of liberase TM (Sigma Aldrich) and 50μg/ml of DNAse solution (Roche) for 30min at 37°C. After 30min, organs were homogenized using 70-μm cell strainers and lymphocytes were isolated using Percoll (Fisher Scientific) gradient. Total cell numbers were counted with trypan blue staining using Kova counting chambers.
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5

Embryonic Rat Cortical Tissue Isolation

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A fetal brain tissue isolation protocol was approved by the Tufts University Institutional Animal Care and Use Committee and complies with the National Institutes of Health Guide for the Care and Use of Laboratory Animals (Institutional Animal Care and Use Committee M2015–28), and by the University of Pennsylvania Institutional Animal Care and Use Committee and complies with the National Institutes of Health Guide for the Care and Use of Laboratory Animals (Institutional Animal Care and Use Committee 805600).
Cortices were isolated from embryonic day 18 (E18) Sprague-Dawley rats (Taconic). Cortices were dissociated using a mix of trypsin (0.25%; ThermoFisher) and DNase solution (0.2%; Roche Applied Sciences) and followed with incubation with trypsin inhibitors (ThermoFisher). Cells were collected in pellets by centrifugation, resuspended in fresh neural medium and counted.
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