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8 protocols using ctla4 apc

1

Treg Subpopulations and CTLA-4 Expression

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Flow cytometry was used to determine the lymphocyte subtypes in the clBALF, hlBALF and PB. The numbers of Treg subpopulations and Tregs with the presence of CTLA-4 in samples were determined by a panel of monoclonal antibodies against: CD4 PE-Cy7, CD25 PE, CD127 BV421, Foxp3 Alexa Fluor 488, CTLA-4 APC (BD, USA); Tregs were defined as CD4+ CD25highFoxp3+ CD127-cells. The amounts of Tregs were presented as a median proportion of CD4-positive cells. Two forms of CTLA-4: surface (s) and intracellular (in) were analyzed in different tubes. For Foxp3 and (in)CTLA-4 detection, membrane permeabilization with Transcription Buffer Set (BD, USA) was used. CTLA-4-positive cells were shown as a median proportion of Tregs. The samples were processed by the FACS Canto II flow cytometer (BD, USA).
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2

Multiparameter Flow Cytometry Panel

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The following directly conjugated antibodies were used: CD3-APCH7, CD27-Alexa Fluor700, MIP1β-PE, CTLA4-APC, TNFα-Cy7PE, IL2-Cy55PCP (BD Biosciences); CD4-Cy55PE, Streptavidin (SA)-quantum dot (QD) 655, Aqua amine reactive dye (Invitrogen); CD45RO-TRPE, 2B4-Cy5PE (Beckman Coulter); IFNγ-eFluor450 (eBioscience); Biotinylated PD-1 (clone BAF1086; R&D Systems); CD8-BV711 (Biolegend). The following antibodies were conjugated in our laboratory: CD8-QD800 and CD57-QD565.
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3

Multiparametric Immune Phenotyping of Cells

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Cells were thawed and cultured in AIM-V culture medium with 5% heat-inactivated human serum in 24-well plates at a concentration of 3–5 × 106 cells/ml. Plates were incubated in a humidified incubator at 37°C, with 5% CO2. After 48 hours of resting, cells were harvested and washed in FACS buffer before surface staining. For exhaustion profile analysis, cells were stained at 4°C for 30 min., washed, and, for tubes only intended for surface staining, resuspended in FACS buffer. For tubes intended for intracellular staining, cells were permeabilized using BD Bioscience Cytofix/CytopermTM Kit according to manufacturer's instructions. The following antibodies were used: CD4-PerCP, CD57-FITC, CD27-PE, CD56-PE-Cy7, CD28-APC, CD8-AmCyan, ICOS-PE, BTLA-PE, CTLA-4-APC, PD-1-PE-Cy7 (all from BD Bioscience, San Jose, CA, USA), Near Infra Red dead cell marker (Dako), LAG-3-FITC (LifeSpan Biosciences), TIM-3 (eBioscience), CD107a; PECy7-conjugated IFN-c; PerCP-conjugated CD8; APC-conjugated CD4, TNF-a; APCCy7-conjugated CD3. Cells were resuspended in FACS buffer prior to acquisition, and the cells were acquired using a BD FACSCanto II flow cytometer. A minimum of 100 000 events were recorded per sample. Analysis was performed with the BD FACSDiva Software (BD Bioscience,)
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4

Flow Cytometric Analysis of CTLA-4 Expression

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Fasting, EDTA-anticoagulated blood samples were collected. The flow cytometric analysis was performed as described in detail in our prior publication [20 (link)] using the following flow cytometric antibodies: CD3-PE-Cy7, CD8-PerCP, CD25-AF700 (Biolegend, San Diego, CA, USA), Foxp3-PE-CF594 and CTLA-4-APC (BD Biosciences, San Jose, CA, USA). A Beckman Coulter Navios flow cytometer and version 1.2 of Beckman Coulter Kaluza software (Brea, CA, USA) were used for quantitative analysis. CTLA-4 expression levels were assessed intracellularly; median fluorescence intensity values (MFI) are indicated. Our gating strategy is described in Figure 1.
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5

Multiparametric Flow Cytometry of CTLA4 in CLL

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Samples were stained for surface markers (CTLA4, Live/Dead) in phosphate-buffered saline + 10% fetal bovine serum for 20 minutes on ice, permeabilized using BD Cytofix/Cytoperm solution on ice for 20 minutes, and then stained for intracellular markers (CTLA4, CD19, CD3) in BD Perm/Wash buffer on ice for 30 minutes. Samples were run on a Beckman Coulter Gallios, collecting at least 10 000 events of interest, and analyzed using Kaluza software. CTLA4 positivity was determined vs isotype control. The following antibodies were used: CTLA4-PE (BD, clone BNI3), CTLA4-APC (BD, clone BNI3), mouse IgG2a,κ isotype control-PE (BD, clone G155-178), mouse IgG2a,κ isotype control-APC (BD, clone G155-178), CD19-PerCP-Cy5.5 (Biolegend, clone HIB19), CD3-AF700 (BD, clone UCHT1), and Live/Dead Fixable Violet (Invitrogen). CLL cells were gated as live/CD19+/CD3 and then analyzed for CTLA4-PE (surface) and CTLA4-APC (intracellular). Intracellular staining of CD19 and CD3 provided better gating separation of B- vs T-cell populations after activation in coculture.
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6

Flow Cytometry Analysis of T-Cells and Monocytes

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PBMC adhered to the insert were removed using ice-cold PBS-Wash (PBS containing 0.5% bovine serum albumin and 1% sodium azide) and centrifuged at 400 x g for 5 minutes. The supernatant was discarded, and the pellet containing the cells was distributed into cytometry tubes and incubated with monoclonal antibodies anti-CD4/PerCP (BD™), CD8/FITC (BD™), CD28/PE (BD™) and CTLA-4/APC (BD™) for lymphocytes, and anti-CD14/FITC (BD™), CD80/PE (BD™), HLA-DR/PerCP (BD™) for CD14+ cells, for 30 min at room temperature protected from light. After incubation, the cells were washed by centrifugation (400 x g for 5 min at room temperature). Then, the cells were fixed with BD Cytofix™ (BD Biosciences®) for 15 min at 4°C. Furthermore, after washing (400 x g for 5 min at room temperature), the cells were resuspended with 300 μL of PBS-Wash/tube and stored at 4°C until the time of acquisition on the FACScalibur flow cytometer (Beckton Dickson). The lymphocyte population was selected FSC versus SSC plots, with 20,000 events acquired within the R1 lymphocyte window, and CD14+ cells were selected via FCS versus FL1, with 1,000 events acquired within the R2 window. After selecting the window of interest (R1) and (R2), CD4+ and CD8+ T lymphocytes and CD14+ cells and molecules were analyzed by obtaining two-dimensional plots of the spot fluorescence distribution using FlowJo® software version 10.8.1.
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7

Comprehensive Flow Cytometry Immunophenotyping

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Different immune cell subpopulations were immunophenotyped with flow cytometry from fresh PB samples with 6 panels of different cell-surface markers, including the following immune checkpoint receptors and cytotoxicity and migration markers: CD3-PerCP-Cy5.5 (BD, catalog 332771), CD4-PE-Cy7 (BD, catalog 560649), CD45-APC-H7 (BD, catalog 560178), CD8-BV510 (BD, 563919), CD56-BV421 (BD, 562751), CXCR1-FITC (BioLegend, catalog 341606), CD16-PE (BD, 561313), TCR γδ-APC (BD, catalog 555718), PD1-FITC (BD, catalog 557860), LAG3-PE (BD, catalog 125209), ICOS-PE-Cy7 (eBioscience, catalog 25-9948-42), CTLA-4–APC (BD, catalog 560938), HLA-DR-BB515 (BD, catalog 560938), CD27-PE (BD, catalog 555441), CD25-PE-Cy7 (BD, catalog 561405), CD11b-APC (BD, catalog 550019), NKG2C-AF488 (R&D Systems, catalog FAB138G), CD161-PE (BD, catalog 556081), NKG2D-PE-Cy7 (BD, catalog 562365), NKG2A-APC (R&D Systems, catalog FAB1059A), DNAM-BB515 (BD, catalog 565152), CD57-PE (BD, catalog 560844), NKp46-PE-Cy7 (BD, catalog 562101), NKp30-AF647 (BD, 558408), CXCR3-AF488 (BD, catalog 561730), CCR7-PE (R&D Systems, catalog FAB197P), CD45RO-PE-Cy7 (BD, catalog 560608), and CXCR4-APC (BD, catalog 560936). CD45+ lymphocytes were acquired with the BD FACS Verse, and the data were analyzed with FlowJo, version 10.4. The results are shown in Supplemental Table 1.
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8

Multiparameter Flow Cytometry Panel

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The following reagents were used: PD-1FITC, CTLA-4APC, CD4FITC/APC-H7/V500, CD14PerCP, CD19PerCP, CD3PerCP, Via Probe, Monensin, functional grade anti-CTLA-4 (BD Biosciences); CD244FITC, PD-1APC, CD127APC-Cy7, IL-2FITC, IFN-γPE, TNF-αPE-Cy7, anti-PD-L1/2 and anti-IgG1 isotype control (eBioscience); TIM-3APC (R&D Systems); CCR7FITC, CD57PacificBlue, CD45RAPacificBlue, functional grade anti-TIM-3 (Biolegend). Micro-Beadsanti-PE (Miltenyi). KLRG1AlexaFluor488 (clone: 13F12F2) was generated as described [14] (link).
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