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11 protocols using type 1 bovine collagen solution

1

Collagen Fiber Formation and Stretching

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The bovine type I collagen utilized in this experiment comes in three distinct concentrations: 1 mg/mL, 3 mg/mL, and 6 mg/mL (Type I bovine collagen solution, Advanced Biomatrix, New York, NY, USA). Collagen solution has a pH of 7.4. To make sure the collagen was entirely formed into collagen fibers after stretching, the collagen solution was incubated at 26 °C for 24 h. Figure 2(a1) is an experimental diagram, Figure 2(a2) is a schematic diagram. In order to minimize the impact of siphon on the experimental results, a rectangular iron block is also added to the upper end of the cover to ensure close contact between the glass sheets. The pipette gun absorbs 15 mL of the fiber solution before dripping it along the end of the cover slide to the overlap. The experiment involved totally submerging the overlapping portion of the covered glass in the fiber solution. The fiber solution is then pulled at various speeds (50 μm/s, 250 μm/s, 500 μm/s) by modifying the loading device. The whole pulling process takes less than 2 min (the cover plate moves about 18 mm). At the end of the experiment, the stretched fiber solution was dried and stored at room temperature for inspection.
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2

Generation of Oral Mucosa Equivalents

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For additional experiments, the full-thickness oral mucosa equivalents were generated as previously described47 (link). Briefly, 1.2 ml type I bovine collagen solution (Advanced BioMatrix, San Diego, CA, USA) was mixed with 300 µl 10 × HBSS (Gibco™, Waltham, MA, USA), and 100 µl 2N sodium hydroxide (AppliChem, Darmstadt, Germany). 300 µl FCS (Biochrom, Berlin, Germany) containing 3 × 105/ml fibroblasts and 1.125 ml sterile H2O were then added to this solution. For polymerisation, 2.5 ml of the fibroblast-collagen I-mixture was transferred to a culture plate insert (24 mm diameter, pore size: 0.4 µm; Corning Costar®, Corning, NY, USA) placed in 6-well-plates (Corning, Corning, NY, USA), and incubated in a humid box at 37 °C for 2 h. Then, the gel was cultivated in DMEM containing 10% FCS. The next day, the medium was removed and 4.2 × 106 OKG4 cells in DermaLife K medium containing 60 µM Ca2+ were placed on the gel. After reaching confluence, the mucosal equivalent was subjected to an air-lift by withdrawing medium from the top and replacing the medium in the well with DermaLife K medium containing 1.4 mM Ca2+. The medium was changed every other day. On day 5 after air-lift, the equivalents were irradiated.
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3

Culture and Expansion of Human Bronchial Epithelial Cells

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Beas-2B immortalized human bronchial epithelial cells were obtained from American Type Culture Collection and cultured in Dulbecco's modified Eagle's medium (Corning) with l-glutamine and 4.5 g/l glucose supplemented with 10% fetal bovine serum (VWR) and 1% penicillin/streptomycin (Corning). Deidentified primary human small airway epithelial cells (smAECs; <2 mm diameter) were obtained from the National Jewish Health Biobank and plated onto an irradiated National Institutes of Health (NIH)/3T3 (American Type Culture Collection) fibroblast feeder layer in F-medium containing 1 μM Y-27632 (APEX Bio). Upon visible colony formation (∼7–10 days), smAECs were removed with 0.25% trypsin (Corning), plated on tissue culture dishes double-coated with type I bovine collagen solution (Advanced Biomatrix), and grown to confluence in BronchiaLife Epithelial Medium supplemented with the complete LifeFactors Kit from Lifeline Cell Technology. All cells were maintained in 5% CO2 at 37 °C.
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4

Melanoma Cell Adhesion on Collagen

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Melanoma cells (2–4 × 103) were plated and allowed to grow for 48 hours on Type I Bovine Collagen Solution, 3 mg/ml, from Advanced BioMatrix (San Diego, CA) prior to imaging.
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5

Differentiation and Characterization of Airway Epithelial Cells

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For differentiation at the air‐liquid interface (ALI), expanded cells were passaged 2–4 times and plated at a density of 250,000 cells/cm2 on permeable polyester Transwell inserts (Corning) coated with a 3 mg/ml of Type I bovine collagen solution (Advanced BioMatrix), grown submerged for 42–54 hr in PneumaCult ‐ Ex Plus (STEMCELL Technologies). Apical media was then removed, and basal media was replaced with PneumaCult – ALI (STEMCELL Technologies) media. Cultures were well‐differentiated and analyzed after 3–4 weeks at ALI (Chioccioli et al., 2019; Goldfarbmuren et al., 2020). Cultures are defined as well‐differentiated macroscopically by the presence of secreted mucus and microscopically by the presence of beating cilia.
For temperature correction of cells obtained from individuals with cystic fibrosis harboring homozygous F508del CFTR mutations, ALI cultures were given fresh media and transferred to 29ºC for 48 hr prior to analysis in the Ussing chamber. For chemical CFTR modulator treatments, cells were treated for 24 hr with media containing either DMSO alone (vehicle), 3 µM VX‐661 (Selleck Chemicals), 10 µM C4/5 µM C18 (CFTR Chemical Compound Distribution Program), or 1 mM 4‐PBA (Sigma).
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6

Collagen Hydrogel Fabrication and MSC Tethering

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Collagen hydrogels were prepared in a sterile condition. First, 200 μL of type I bovine collagen solution (3 mg/mL in 0.01 N hydrochloric acid; Advanced BioMatrix) was mixed with 100 μL of culture media. Then, 25 μL of reconstituting solution (0.26 M sodium bicarbonate, 0.2 M HEPES, 0.04 N NaOH) was gently mixed with the collagen solution. The pregel solution was quickly transferred to a precooled 96 well plate and incubated at 37 °C for 3 h. MSCs were tethered with particles, as previously described. After removing the unbound particles, the cells were resuspended and injected through a 30G needle (inner diameter, 0.159 mm) at a speed of 1.5 mL/min. The detached particles were removed via centrifugation. Then, 100 μL of cell suspension (8 × 105 cell/mL) was added to the premade collagen hydrogels. For the inhibition experiment, particle-tethered cell suspension was added onto the hydrogel in the presence of anti-TNFα antibody (1:100). Cell culture media was collected after 24 h. The concentrations of VEGF and TIMP-1 were normalized to the cell number and measured using the DuoSet enzyme-linked immunosorbent assay kit (R&D Systems, USA).
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7

Evaluating Brigatinib and Lorlatinib Cytotoxicity

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Tumours were harvested and dissociated cells cultured in DMEM (Gibco BRL, Life Technologies) supplemented with 10% inactivated foetal bovine serum (Gibco) and 1% penicillin/streptomycin (Gibco). Cells were seeded in 48‐well plates precoated with 0.4% solution of type I bovine collagen solution (Advanced BioMatrix, lot no. 7434). The following day, cells were treated with either brigatinib (0, 16, 31, 63, 125, 250, 500 nM; Selleckchem) or lorlatinib (0, 16, 31, 63, 125, 250, 500 nM; Selleckchem). ATP content in the treated cells was determined by CellTiter‐Glo 3D cell viability assay (Promega) according to the manufactures' protocol.
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8

Collagen-Dependent Cell Invasion Assay

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Human and murine cSCC cells were seeded onto cell culture inserts (Fisher Scientific) at 25,000 cells per insert containing either 0.3 μg/mL bovine Type I collagen solution (Advanced Biomatrix) or 0.3 μg/mL bovine Type II collagen solution (Southern Biotech). Type I and Type II collagen gel matrices were prepared as per Manufacturer protocol. Invasion chambers were incubated for 24 hours following cell seeding. After which, membranes were removed, fixed in 4% PFA, and stained with DAPI. Cells were visualized by DAPI fluorescence using a Zeiss LSM 5 Exciter confocal microscope and the number of invasive cells on five randomly chosen fields of view per insert were counted. The average number of cells per membrane was statistically compared using the Student’s t-test between groups (N = 3 inserts/group). In some cases, culture media was supplemented with 10 μM of the broad spectrum MMP inhibitor GM6001 (Selleckchem) or 10 μM of the CTSK inhibitor MK-0822 (Selleckchem).
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9

Biomimetic Collagen-Hydroxyapatite Composites

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Collagen/hydroxyapatite composites were prepared according to a previously established protocol [33 (link)]. Briefly, the required amount of hydroxyapatite nanoparticles (10 µm powder, Fluidinova, Moreira da Maia, Portugal) was weighted, washed with TBS (tris buffered saline, Biolegend), and then equilibrated in TBS overnight. Thereafter, the TBS/HA solution was centrifuged for 20 min at 3000 rpm. TBS supernatant was discarded and a VEGF-mimicry peptide solution (200 µg peptide in 400 µL TBS (molar concentration: QK—0.52 mM; E7-QK—0.35 mM) per 10 mg HA) was added and incubated with HA for 2 h while rotating (15 rpm). The respective volume of the bovine type I collagen solution (HA: Coll = 2:1) (Advanced Biomatrix, San Diego, CA, USA) was added and then put into an incubator for polymerization at 37 °C for 30 min.
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10

Visualizing Peptide-Hydroxyapatite Binding

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The TAMRA-labeled E7-QK peptide was used in order to visualize peptide binding to HA and retention within the collagen/hydroxyapatite scaffold. First, 10 mg of the hydroxyapatite powder (Fluidinova, Moreira da Maia, Portugal) was weighted and washed once with TBS buffer (0.15 M NaCl/50 mM Tris/HCl, pH 7.4). After equilibration in TBS buffer overnight and centrifugation, 200 µg peptide in 400 µL TBS (E7-QK-TAMRA—0.15 mM) were incubated with 10 mg HA for 2 h at room temperature under continuous rotation (15 rpm) and protected from light. One milliliter of bovine type I collagen solution (Advanced Biomatrix, San Diego, CA, USA) was added, mixed completely and then put into the 37 °C incubator for 30 min. After scaffold polymerization, fluorescence images were taken using the Axio Observer Z1 fluorescence microscope (Zeiss, Oberkochen, Germany).
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