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13 protocols using cd34 pe

1

Umbilical Cord Mesenchymal Stem Cell Isolation

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After taking the parents’ informed consent, fresh human umbilical cord samples were obtained during caesarean deliveries of healthy newborn infants for healthy mothers. Wharton jelly was retrieved at the moment of birth from term deliveries. Collagenase II enzyme (IgG, C. histoliticum, Biological Life Science, USA) was used to isolate UC-MSCs, which were then digested and maintained in 2% foetal bovine serum and 1x Pen/Strep (Invitrogen, CA, USA). Cells were then incubated at 37° C, 5% CO2 till cells will reach 70–80% confluence, rinsed with phosphate buffer saline (PBS), and trypsinized at 37° C with 0.25% trypsin-EDTA (Invitrogen) for 5 min. After ultracentrifugation, cell pellets precipitate were resuspended with medium and maintained as first-passage cultures [23 (link)]. Every tube contained 1 × 105 cells were mixed with 10 µL of monoclonal antibodies against the surface markers: mesenchymal surface markers CD 29 PE, CD34 PE, and CD 90 PE (Beckman coulter, USA) in the dark at 4° C. The same species isotypes were used as a negative control. After incubation, 2 ml of PBS containing 2% fetal calf serum (FCS) solution were supplied, centrifuged and cells were recovered with fresh medium. Cell evaluation was done using CYTOMICS FC 500 Flow Cytometer (Beckman coulter, FL, USA), and CXP Software version 2.2 was used for analysis.
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2

Phenotypic Analysis of Mesenchymal Stem Cells

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Phenotypic analysis of MSC was performed during monolayer expansion (prior to encapsulation in the hydrogel) and throughout scaffold culture. Briefly, to perform phenotypic analysis MSC were incubated with fluorescein isothiocyanate (FITC)- or phycoerythrin (PE)-conjugated mouse anti-human antibodies CD34-PE, CD45-FITC, HLA-DR-FITC, CD44-FITC, CD73-PE, CD90-FITC, CD105-PE and CD166-PE (Beckman Coulter, Brea, CA, USA) for 30 minutes at room temperature. Negative and isotype (FITC and PE) controls were performed. After immunofluorescence staining, for each sample 10,000 events were counted by Gallios flow cytometer (Beckman Coulter, Brea, CA, USA).
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3

Comparative Analysis of hBM-MSCs and hWJ-MSCs Phenotypes

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hBM-MSCs and hWJ-MSCs were detached and counted; 1 × 105 cells were incubated at RT for 20 min with the following directly conjugated mouse-anti human antibodies: CD90 FITC (Beckman Coulter, Fullerton, CA, USA), CD73 APC (Miltenyi Biotec, Gladbach, Germany), CD105 PE (Beckman Coulter, Fullerton, CA, USA), CD45 PC7 (Beckman Coulter, Fullerton, CA, USA), HLA class-II FITC (Beckman Coulter, Fullerton, CA, USA), CD14 PC7 (Beckman Coulter, Fullerton, CA, USA), and CD34 PE (Beckman Coulter, Fullerton, CA, USA). The isotype-matched immunoglobulins IgG1 FITC (Beckman Coulter, Fullerton, CA, USA), IgG1 PE (Beckman Coulter, Fullerton, CA, USA), IgG1 APC (Beckman Coulter, Fullerton, CA, USA), and IgG1 PC7 (Beckman Coulter, Fullerton, CA, USA) were used as negative controls under the same conditions. At least 15,000 total events were acquired with a BD FACSVerse flow cytometer (Becton Dickinson, BD, NJ, USA). Further analysis and plots were generated using the BD FACSuite analysis software. Statistics are summarized in Table S1 (Supplementary Materials).
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Phenotypic Analysis of WJ-MSCs

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Briefly, to perform phenotypic analysis, WJ-MSC were incubated with fluorescein isothiocyanate (FITC) or phycoerythrin (PE) conjugated mouse anti-human antibodies CD34-PE, CD45-FITC, HLA-DR-FITC, CD90-FITC, CD73-PE, CD105-PE, and CD166-PE (Beckman Coulter) for 30 min at room temperature. Negative and isotype (FITC and PE) controls were performed. After immunofluorescence staining, for each sample, 10,000 events were counted by Gallios flow cytometer (Beckman Coulter).
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5

Characterization of Leukemia Stem Cells

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The characterization of the LSC population and its differentiation was evaluated by direct immunofluorescence staining using different combination of the following monoclonal antibodies: CD34-FITC, CD34-PE, CD38-PECy5, CD123-PE, CD11b-PE (Beckman Coulter). Mouse IgG antibodies were used as isotype controls.
MRP4/ABCC4 protein expression was detected by indirect immunofluorescence staining using the affinity purify polyclonal anti-human MRP4 antibody (1/50) [46 (link)]. The secondary antibody used in 1/200 dilution was goat anti-rabbit AlexaFluor 488 (Invitrogen). Incubations with antibodies were performed in PBS 2% FCS for 45 min at 4°C. Cells were washed twice with PBS 4% FCS and resuspended in PBS. Incubation without MRP4 antibody was performed as a negative control.
Data were acquired using a CyAn ADP Flow Cytometer (DakoCytomation, Beckman Coulter) and analysed using FlowJo software (Treestar).
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6

Phenotypic Characterization of hPDLSCs

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Evaluation of hPDLSCs phenotype was conducted by flow cytometry, as previously described [17 (link),19 (link)]. Briefly, 2.5 × 105 cells were incubated for 30 min with following antibodies: anti-CD44-FITC, anti-CD105-FITC, anti-CD29-PE, and anti-CD45-FITC (Ancell Corporation, Bayport, MN, USA); anti-CD14-FITC (Miltenyi Biotec, Bergisch Gladbach, Germany); OCT3/4-PE, CD73-PE, SOX2-Alexa488, SSEA4-FITC, CD90-FITC (Becton Dickinson, San Jose, CA, USA), and CD34-PE (Beckman Coulter, Fullerton, CA, USA). After incubation with appropriate secondary antibodies, fixation in 1 mL PBS 0.5% paraformaldehyde and washing, cells were analyzed using a FACStar-plus flow cytometry system and the FlowJo™ software v10.0.7 (TreeStar, Ashland, OR, USA).
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7

Cell Surface Antigen Analysis

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Cells for cytometric analysis were suspended in 100 µL of PBS buffer containing no calcium or magnesium ions and transferred to cytometric probes. 10 μL of surface antibodies CD34- PE (Beckman Coulter, Brea, CA, USA) were added to each probe, and subsequently, samples were incubated at room temperature without access to light for 15 min. Afterward, 0.5 mL of PBS was added and cytometric analysis was performed on a Navios (Beckman Coulter) cytometer.
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8

CD34+ Cell Expansion via CTL Co-Incubation

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5000 umbilical cord blood (UCB) or bone marrow (BM) derived CD34+ or CD133+ cells were co-incubated overnight with irradiated (3000 rad) CTLs (CMV CTL clone 5D5 [19 (link)], HA-1 CTL clone 3HA15 [28 (link)] or allo-A2 CTL clone MBM13 (kindly provided by Prof. Fred Falkenburg, LUMC, The Netherlands)) at an effector to target ratio of 7:1 in a 96 round bottom plate in 10% HS in IMDM. In total, 6 wells per condition were plated. The next day, cells were washed twice with CAFC medium (IMDM supplemented with 3.2% inactivated FCS, 3.2% HS, 2.3 mM glutamine (Gibco, Breda, The Netherlands), 3x102 U/ml penicillin (Bio-Whittaker) and 3x102 μg/ml streptomycin (Bio-Whittaker), 7.2x10−3mM hydrocortisone (Sigma, Zwijndrecht, The Netherlands) and 7.2 mM β-mercapto-ethanol (Sigma)). Viable CD34+ cells were quantitatively determined by flow cytometry with CD45-FITC, CD34-PE, 7AAD and Flow-Count fluorospheres (all Beckman Coulter, Mijdrecht, The Netherlands). Cells of 1 well per condition were subjected to a liquid human progenitor cells (HPC) assay and cells of 4–5 wells per condition were subjected to a cobblestone area-forming cell (CAFC) assay.
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9

Flow Cytometry Phenotyping of hPDLSCs

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The study of hPDLSC phenotype was performed by flow cytometry, as earlier stated (Diomede et al., 2018a (link)). Shortly, 2.5 × 105 cells were incubated for 30 min with the following antibodies: anti-CD44-FITC, anti-CD105-FITC, and anti-CD29-PE (Ancell Corporation, Bayport, MN, United States); anti-CD14-FITC (Miltenyi Biotec, Bergisch Gladbach, Germany); OCT3/4-PE, SOX2-Alexa488, CD73-PE,CD90-FITC (Becton Dickinson, San Jose, CA, United States) and CD34-PE (Beckman Coulter, Fullerton, CA, United States). After incubation with proper secondary antibodies, fixation in 1 mlL of PBS 0.5% paraformaldehyde and washing, cells were detected utilizing a FACStar -plus flow cytometry system and the FlowJoTM software v10.0.7 (Tree Star, Ashland, OR, United States). The hPDLSCs at P2 were analyzed with an inverted light microscopy Leica DMIL (Leica Microsystem, Milan, Italy).
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10

Purification and Extraction of Leukocyte Subtypes

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Fresh peripheral blood and bone marrow samples were processed via ammonium-chloride-potassium red cell lysis, washed, and prepared for fluorescence-activated cell sorting (FACS) for purification of promyelocytes (CD14−, CD15+, CD16low/−) (Elghetany et al., 2004 (link)), monocytes (CD14+), neutrophils (CD14−, CD15+, CD16+) (Elghetany et al., 2004 (link)), and CD34+ cells. The following antibodies were used for FACS: CD34-PE (PE-pool, Beckman Coulter, PN IM1459U), CD14-APC (BD, clone M5E2), CD15-FITC (BD, clone HI98), CD16-PE (BD, clone 3G8), CD33-APC (eBioscience, clone WM-53), CD3-V450 (eBioscience, clone OKT3), and CD19-PE (BD, clone HIB19). Purified cells were then immediately submitted for DNA or RNA extraction using Qiamp DNA mini and Zymo Micro RNA kits, respectively, and then used as input for the genomic analyses below.
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