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5 protocols using igg alexa fluor 488

1

Automated Mitochondrial Morphology Analysis

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Cells were cultured on coverslips and fixed with 4% paraformaldehyde/PBS, and then they were incubated overnight with anti‐HSP60 (1:300; Santa Cruz Biotechnology) or anti‐LC3B (1:250; Cell Signaling Technology) antibodies at 4°C in a darkroom. After washing and incubating with a fluorescently labeled secondary antibody, either IgG‐Alexa Fluor 594 or IgG‐Alexa Fluor 488 (1:300; Cell Signaling Technology). A final incubation was performed to stain the cells with DAPI (Beyotime)(Zhou et al., 2018). Images were captured using a confocal laser microscope at 600 × magnification (Nikon). Pearson's correlation coefficients were calculated with Image J v2.4.1.7 using 40 cells from 10 images (four cells per image) for each cell line (Zinchuk et al., 2013). Fragmented mitochondria‐containing cells were quantitatively defined using Image J, according to published criteria (Wang et al., 2016).
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2

Multimodal Mitochondrial Imaging and Protein Localization

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Cells were cultured on coverslips and incubated in DMEM containing 100 nM MitoTracker Red (Invitrogen, Carlsbad, CA, USA) for 30 min at 37 °C in the dark. After staining, cells were washed with fresh growth medium, and fixed with 4% paraformaldehyde/phosphate-buffered saline (PBS) for 20 min. Cells were then permeabilized with PBS containing 0.2% Triton X-100 for 3 min at room temperature, and incubated overnight with anti-HSP60 (1:300; Santa Cruz Biotechnology) or anti-phospho-ERK (Thr202/Tyr204) (1:250; Cell Signaling Technology) antibodies at 4 °C in a darkroom. Next, cells were washed with PBS and incubated with a fluorescently labeled secondary antibody either IgG-Alexa Fluor 594 or IgG-Alexa Fluor 488 (1:300; Cell Signaling Technology) for 1 h at room temperature in the dark. A final incubation was performed to stain the cells with 4,6-diamidino-2-phenylindole (DAPI; Beyotime, Jiangsu, China) for 15 min at room temperature. After mounting the coverslips, images were captured using a confocal laser microscope at a magnification of ×600 (Nikon, Telford, UK).
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3

Immunofluorescent Staining of Cellular Organelles

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The immunofluorescent staining of cell nuclei, EndoG, mitochondria, and γH2AX foci was performed according the following protocol: cells grown on cover slips were washed in PBS and fixed in 4% paraformaldehyde (in 1xPBS, pH 7.4) for 15 min at room temperature. After washing with PBS, cells were permeabilized using 0.1% Triton-X 100 (in 1xPBS, pH 7.4) at room temperature and then incubated with the blocking reagent (5% Bovine serum albumin in 1xPBS, pH 7.4) for 45 min. The primary antibody: EndoG (ab9647, Abcam), mitochondria antibody [MTC02] (ab3298, Abcam), and γH2AX (ab26350, Abcam) was diluted in 1% bovine serum albumin, (in1xPBS pH 7.4) and incubated with the cells at room temperature. After the incubation, cells were washed with PBS and the fluorescent-labelled secondary antibody diluted in the same buffer was added to cells (IgG-Alexa Fluor 555, A-31572 Invitrogen; IgG-Alexa Fluor 488, #4408, Cell signalling). The cells were incubated for 1 hour in the dark at room temperature. After washing, the DNA was stained with 49-6-diamidine-2-phenyl indole (DAPI, Invitrogen) diluted to a final concentration 1μg/ml in the same buffer. Cells were then washed in PBS and mounted with the anti-fade medium (Vectashield).
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4

Corneal Fibroblast Characterization Protocol

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Tetrandrine was purchased from ATK chemical (QingPu, Shanghai, China). Bovine albumin fraction V powder was obtained from (Loba Chemie Pvt, Mumbai, India). Low molecular weight Chitosan 50–190 kDa was provided by Sigma Aldrich (St. Louis, MO). Glutaraldehyde was from Al-Gomhureya Chemicals (Cairo, Egypt). Ethanol, Acetonitrile; HPLC grade were from Fisher Scientific (Warrington, UK). All other chemicals and organic solvents were of analytical grade. TAC and MDA kit (Biodiagniostic, Giza, Egypt). Anti-Ki-67 conjugated rabbit monoclonal antibodies Alexa Fluor 488 (IgG, Cell Signaling Technology, Waltham, MA) and the cell surface markers for the corneal fibroblast characterization (CD90, CD105, CD11b, CD45, and CD73) were from (Abcam, Cambridge, UK).
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5

Quantifying MeCP2 Expression in AAV-Transduced Cells

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Cells were plated at 30,000 cells per well in 8-well Lab-Tek II chamber slide (Thermo Fisher Scientific) 24 h prior to transduction. 24 h after plating, cells were transduced with AAVHSC7-226 at a MOI: 150,000. Before staining, cells were washed with PBS and fixed with 4% paraformaldehyde 48 h after transduction. They were then rinsed 3-times with PBS and blocked with PBS containing 3% BSA and 0.3% Triton X-100 for 1 h at room temperature. This was followed by incubation with primary anti-MeCP2 antibody (1: 100 dilution; Cell Signaling, #3456) and an anti-GFP antibody (1:500 dilution, Thermo Fisher, # MA5-15256) in PBS containing 1% BSA and 0.3% Triton X-100 at 4°C overnight. The cells were then rinsed 3-times with PBS and incubated with secondary antibodies. Secondary antibodies used were anti-rabbit Alexa Fluor-555 IgG (1:500, cell Signaling, #4413) and anti-mouse Alexa Fluor-488 IgG (1:500, cell Signaling, #4408) in PBS containing 1% BSA and 0.3% Triton X-100 for 2 h at room temperature in dark. The cells were finally rinsed 3-times with PBS, mounted with antifade reagent containing DAPI (VECTASHIELD Vibrance®, #H-1800) and visualized at ×40 magnification using the Zeiss LSM 700 confocal microscope.
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