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28 protocols using calf thymus dsdna

1

Quantification of Autoantibodies in Murine Lupus

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Serum samples were taken from mice at the beginning (eight weeks) and end (15 weeks) of the experiments and were stored at -35°C until anti-dsDNA (15 (link)), and anti-Histone (22 (link)) antibodies were analyzed by ELISA as follows. A MaxiSorp plate (Nunc, Rochester, NY, USA) from 96-well was coated with 2.5 μg/ml calf thymus dsDNA (Sigma Aldrich, St Louis, MO, USA) or 10 μg/ml calf thymus histone (Roche Diagnostic, Mannheim, Germany) in 100 μl of bicarbonate buffer overnight at 4°C. Bovine serum albumin (BSA, Invitrogen, Carlsbad CA, USA) at 2% was used to block the plate. The plate was incubated for one hour at 37°C with serum (1:50) or the anti-dsDNA antibody standard (clone 16-13, Chemicon International, Billerica MA, USA) or was incubated for two hours at room temperature with serum (1:150) for anti-histone antibody. The plate was washed and incubated with rabbit anti-mouse IgM, IgG, IgG1, or IgG2a conjugated to alkaline phosphatase (AP, Zymed Laboratories, San Francisco CA, USA) or anti IgG2b or IgG3 conjugated to peroxidase (HRP), after which substrate was added. (5-bromo-4-chloro-3- indolyl phosphate; Sigma−Aldrich, St Louis MO, USA) for AP or HRP substrate (3.3’,5,5’ tetramethylbenzidine TMB Sigma−Aldrich), respectively. The O.D. was read at 405 or 450 nm using a Dynatech MR5000 ELISA reader.
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2

Direct ELISA Protocol for Biomolecule Binding

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Direct ELISA assays were performed similarly to those reported previously. Briefly, high-binding Costar 96-well plates (Corning) were coated with 0.5 μg salmon sperm ssDNA (Abcam), calf thymus dsDNA (Sigma-Aldrich), lipopolysaccharide from E. coli (Sigma-Aldrich), chicken egg white lysozyme (Sigma-Aldrich), or 0.25 μg insulin (Fitzgerald) and incubated overnight at 4 °C. The next morning, plates were washed three times using wash buffer (PBS pH 7.5, 0.001% Tween), were blocked using blocking buffer (PBS pH 7.5, 0.1% Tween-20, 1 mM EDTA, 2% BSA) for two hours at room temperature, and then were washed three times with wash buffer. Following blocking, nanobodies (200 μL) were incubated at the indicated concentrations at room temperature in PBS pH 7.5 for two hours. After three more washes, plates were incubated with HRP-anti V5 antibody (Abcam ab1325, 1:10,000 dilution) in PBS + 2% BSA for one hour at room temperature. Plates then were washed three times with wash buffer and 1-Step ABTS substrate solution (100 μL, Thermo Scientific) was added to the plates, which were then incubated in the dark for 20 min. Stop solution (1% SDS in PBS, 100 μL) was added to each plate and absorbance at 405 nm was measured using a Spectromax M5 microplate reader. Results were analyzed in GraphPad Prism.
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3

Measuring Serum Anti-dsDNA Antibodies by ELISA

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Serum anti-dsDNA Ab levels were determined by ELISA as described previously (Kawagoe et al, 2009 (link)). Briefly, plates were coated with 5 μg/ml calf thymus dsDNA (Sigma-Aldrich). Sera were added to the plate and further incubated with AP-conjugated anti-mouse IgG Ab after washing. Then the AP substrate (Sigma-Aldrich) was added, and absorbance was measured at 405 nm. Anti-dsDNA concentrations were quantified according to the standard curve. Concentrations of total IgM and IgG1 levels in the sera were determined by ELISA as described previously (Kawagoe et al, 2009 (link)).
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4

IgG Autoantibody Levels in Mice Sera

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The levels of IgG class autoantibodies to single-stranded (ss) DNA, dsDNA, histone, and nucleosome (histone–DNA complex) in mice sera were measured by ELISA, as previously described [43 (link),44 (link)]. Briefly, 96-well plates were coated with 50 µg/mL calf thymus dsDNA (Sigma) (sheared by sonication and digested with S1 nuclease [Promega, Madison, WI]), 50 µg/mL ssDNA (prepared by boiling dsDNA and rapid chilling), and 10 µg/mL histone (Sigma) or nucleosome (histone and dsDNA) in PBS overnight at 4 °C. Then, the 1/100 diluted sera in PBS-10% horse serum were added and incubated overnight at 4 °C. Finally, anti-IgG antibody conjugated to alkaline phosphatase (Sigma) diluted to 1/3000 was added, and the plate was incubated at room temperature for 1 h. The p-nitrophenylphosphate substrate (Sigma) was added, and the absorbance at 405 nm was read with an ELISA plate reader (Molecular Devices, Sunnyvale, CA, USA).
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5

DNA Coating for Immunoassay Development

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Maxisorp 96 well plates (Thermo Scientific) were coated overnight at 4 °C with calf thymus dsDNA (Sigma-Aldrich) diluted in TE buffer (Tris-HCl 10 mM, EDTA 1 mM pH 9) at a concentration of 2 µg/mL and diluted in the same volume of Pierce DNA coating solution (Thermo Scientific) to obtain a final concentration of 1 µg/mL of dsDNA. The same protocol as for anti-RNP IgG was then followed but the PBS-T contained 0.05% of Tween-20.
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6

Quantifying Autoantibody Levels in Mice

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Serum levels of IgG anti-cyclic citrullinated peptide (CCP) antibodies were measured employing commercially available kits (Cosmic Corporation) using anti-mouse IgG second antibodies and were expressed as relative units according to the manufacturer’s instructions. Serum levels of rheumatoid factor (RF) were measured using an ELISA, as previously described [15 (link)]. Briefly, an ELISA plate pre-coated with mouse IgG Fc fragment (OEM Concepts) was incubated with appropriately diluted mouse serum samples, washed, and then incubated with peroxidase-conjugated rat anti-mouse κ chain antibodies (BD Biosciences Pharmingen). RF activity was expressed in units referring to a standard curve obtained by serial dilution of a standard serum pool from 4–6-month-old MRL/lpr mice containing 1000 unit activities/ml. Serum IgG anti-double-stranded (ds) DNA was measured using an ELISA plate pre-coated with 5 μg/ml calf thymus dsDNA (Sigma-Aldrich). DNA-binding activity was expressed in units as previously described [10 (link)].
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7

Autoantibody and Insulin Detection Assays

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Murine serum was tested by ELISA for reactivity to calf thymus dsDNA (Sigma-Aldrich), and sm-RNP (ATR1-10; Arotech Diagnostics Limited) which has previously been described58 (link).
To obtain RNA samples for quantitative PCR, murine spleens were digested with collagenase Type 4 (Worthington Biochemical), followed by calcium chelation, RBC lysis and made into single cell suspensions.
Insulin was detected by immunohistochemistry in paraffin embedded pancreas tissue sections using a Leica Bond MAX Automated Immunostainer (Leica Microsystems) and guinea pig anti-insulin (Dako-A0564) primary antibody with rabbit anti-guinea pig (Abcam) and goat anti-rabbit poly-HRP (Leica Microsystems) secondary antibodies. Visualization was with DAB-Bond Polymer Refine (Leica Microsystems).
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8

ELISPOT Assay for IgG Anti-dsDNA Antibodies

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IgG anti-dsDNA antibody-forming cells were detected by enzyme-linked immunosorbent spot-forming cell assays (ELISPOT). MultiScreen-IP sterile white plates (Millipore) were pre-wet with 50 μl of 70% ethanol per well before washing five times with water. Plates were then coated with 100 μl of 100 μg/ml calf thymus dsDNA (Sigma) in PBS (PH 7.4) overnight at 4°C. Coated plates were blocked with culture media for 1 hour at room temperature (RT). For detection of IgG anti-dsDNA–producing cells, 5×105 fresh PBMCs were added to each well. The plates were incubated for 72 hours at 37°C and the cells were washed away with PBS. Biotinylated anti-IgG at 1 μg/ml (MABTECH) was added to the wells and incubated for 2 hours at RT, followed by incubation with alkaline phosphatase-labeled streptavidin (MABTECH) diluted at 1:1000 for 1 hour at RT. Specific antibody-binding spots were visualized with substrate 5-bromo-4-chloro-3-indolyl phosphate/NBT-plus (MABTECH). Developed plates were evaluated and read by ZellNet Consulting (Fort Lee, NJ). Results are expressed as the number of IgG anti-dsDNA antibody forming cells (AFC) per 106 PBMCs.
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9

Detecting Autoantibodies in Rheumatic Diseases

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Briefly, high binding plates (Costar) were coated with the following antigens diluted in PBS: 3 μg/ml of IgG to detect IgM rheumatoid factor antibodies; 3 μg/ml of anti-mouse IgG (Sigma M2650) to detect total IgG; 3 μg/mL of F(ab')2 fragments anti-mouse IgM to detect total IgM; 10 μg/ml of calf thymus dsDNA (Sigma) to detect anti-dsDNA IgG antibodies and 10 μg/ml of Ro52 (Sigma) antigen to detect anti-Ro52 antibodies. Purified antibody anti-dsDNA (Clone HspS22, Immunotools) was used as standard. Samples were diluted 1/100 for anti-dsDNA, 1/40 for rheumatoid factor, 1/40000 for total IgG, 1/5000 for total IgM and 1/20 for anti-Ro52 followed by the next secondary antibodies: Horseradish peroxidase (HRP) conjugated goat anti-mouse IgG (Sigma; dilution 1/2000) for anti-dsDNA, total IgG and anti-Ro52; Biotin rat anti-mouse IgM (BD Pharmingen; dilution 1/2000) and HRP-conjugated streptavidin (Roche; dilution 1/5000) for IgM rheumatoid factor and total IgM. Plates were developed with TMB substrate (BD Bioscience) and read with an Epoch plate reader at 450–570 nm.
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10

Quantifying Immune Responses in Mice

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Sera were collected from peripheral blood bi-weekly and by intracardiac puncture at study endpoint. In some experiments, isolated splenocytes were stimulated ex vivo by anti-CD3 antibodies (1 μg/mL) or graded doses of IL-33 as indicated. Cytokines including IL-6, tumour necrosis factor (TNF)-α, IL-1β, IFN-γ, IL-17, IL-12, IL-10, IL-4, IL-5, IL-13, immunoglobulin G (IgG) (all Thermo, USA), and IgG anti-BSA antibodies (MyBioSource, USA) were measured by commercial enzyme-linked immunosorbent assay kits. Anti-double-stranded (ds) DNA antibodies were detected by in-house enzyme-linked immunosorbent assay pre-coated with poly-L-lysine (Sigma) followed by calf thymus dsDNA (50 ng/mL, Sigma).
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