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9 protocols using erythromycin

1

Isolation and cultivation of wine bacteria

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The industrial O. oeni strain, SD-2a was isolated from a local wine region in Shandong Province, China (Wang et al., 2015 (link)), and preserved in China General Microbiological Culture Collection Center (CGMCC 0715). L. plantarum SL09 was isolated from red wine and identified by 16S rRNA gene analysis (Supplementary Table S1; Lee et al., 2016 (link); Wang et al., 2016 (link)).
Oenococcus oeni SD-2a was cultured at 28°C in FMATB (5 g/L glucose, 5 g/L D, L-malate, 5 g/L yeast extract, 10 g/L peptone, 0.2 g/L MgSO4⋅7H2O, 0.05 g/L MnSO4⋅4H2O, 0.5 g/L cysteine/HCl, and 250 mL fresh tomato juice, pH 4.8). L. plantarum SL09 was cultured at 37°C in MRS broth, and Escherichia coli DH5α grew at 37°C in Luria-Bertani (LB) medium. Agar plates were prepared with 15 g/L agar. The culture of L. plantarum SL09 strain with plasmid pMG36e or pMG36eargG required the addition of erythromycin (Solarbio, Beijing, China), with a final concentration of 100 μg/ml, meanwhile, the E. coli DH5α strain with plasmid pMG36e or pMG36eargG required the addition of erythromycin (Solarbio, Beijing, China) with a final concentration to 200 μg/ml.
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2

Characterizing Antibiotic Resistance in E. coli

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First, E. coli K12 (MG1655) was been sequenced (Shanghai Majorbio Bio-pharm Technology Co., Ltd), which was designated as the original wild type strain (Table 1). Activating E. coli from storage tube with glycerol stock which stored in − 80 °C, expanding propagating on a Luria Bertani (LB) agar plates, cultured at 37 °C for 16 h. The selected seed strain was cultured in LB broth at 37 °C for 12 h for following selected experiments (Li et al. 2016 (link)).

The MIC of each antibiotic to wild-type E. coli K12

NoAntibioticsAbbreviationClassificationStock solution (mg/L)MIC (mg/L)
1ciprofloxacinCipQuinolones2000.2
2tetracyclineTettetracyclines102.34
3GentamicinGenAminoglycosides108.75
4polymyxin BPolPolypeptides100.94
5erythromycinEryMacrolides6.415
6chloramphenicolChlchloramphenicols304.69
The involved antibiotics: chloramphenicol (Chl), ciprofloxacin (Cip), erythromycin (Ery), gentamycin (Gen), tetracycline (Tet), and polymyxin B (Pol) and cupric (CuSO4·5H2O) were get from Solarbio, Inc. (Shanghai, China). 90% inhibition of growth was regarded as the MIC of each antibiotic, which was determined as Additional file 1: Test S1 described, and the MIC of copper ions was also investigated with the same method. The detailed accounts are displayed in Additional file 1: Text S1. The tetracycline resistant cultures were kept from light so as not to degrade the antibiotic.
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3

Quantification of Dopamine and Related Compounds

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BBR, dopamine, and l-dopa were obtained from J&K Scientific Ltd (Beijing, China). 3,4-Dihydroxybenzylamine (as an internal standard, IS) was purchased from Alfa Aesar Chemical Co., Ltd (Ward Hill, MA, USA). Tyrosine, phenylalanine, α-methylphenylalanine, BLMA5 (an inhibitor of TH), and benserazide (an inhibitor of DDC) were obtained from Solarbio Life Science Co., Ltd (Beijing, China). 15N-Tyrosine (15N-Tyr, purity > 98%) was obtained from Cambridge Isotope Laboratories, Inc. (MA, USA). Cefadroxil, terramycin, and erythromycin were obtained from Solarbio Life Science Co., Ltd (Beijing, China). Carbidopa was from Selleckchem (Selleck Chemicals, Houston, TX, USA). P and MPTP-HCL were from Medchemexpress (MedChem Express LLC, Princeton, NJ, USA). The purity of the standards above was >98% (HPLC). The TH ELISA kit was from Shanghai Bangyi Biotechnology, Ltd (Shanghai, China). The DDC ELISA kit was from Shuangying Biological, Ltd (Shanghai, China). The PAH ELISA kit and BH4 ELISA kit were obtained from Shanghai Fusheng, Ltd (Shanghai, China) and Shanghai Jianglai, Ltd (Shanghai, China), respectively. The ROS assay kit was from the Nanjing Jiancheng Bioengineering Institute (Nanjing, China).
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4

Bacterial culturing conditions and strains

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B. cereus BC1 and its derivatives were cultured in tryptic soy broth (TSB) at 37 °C, 200 rpm, or on nutrient agar plates at 37 °C in standing culture. E. coli strains were grown in Luria–Bertani (LB) medium at 37 °C. The following concentrations of antibiotics were added when needed: 10 μg/mL erythromycin (Beijing Solarbio Science & Technology Co., Ltd., Beijing, China) 50 μg/mL kanamycin (Beijing Solarbio Science & Technology Co., Ltd., Beijing, China) for B. cereus growth, and 100 μg/mL ampicillin (Shanghai Boer Chemical Reagents Co., Ltd., Shanghai, China) for E. coli growth. The strains and plasmids used in this work are listed in Table S1. Primers are listed in Table S2.
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5

Construction and Characterization of Recombinant Plasmids

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Plasmids including pMG36e-RFP-EGFP (358), pMG36e-EGFP-mcherry, pMG36e-penp-OVA, pMG36e-CMV-penp-OVA and pNZ8149-penp-OVA were constructed and kept by Xinjiang Key Laboratory of Biological Resources and Genetic Engineering. pMG36e-RFP-EGFP (358) encodes a green fluorescent protein (EGFP) under the control of a eukaryotic promoter CMV and a red fluorescent protein (RFP) under the control of a prokaryotic promoter penp. pMG36e-EGFP-mcherry encodes EGFP-mcherry under the control of a prokaryotic promoter penp. pMG36e-penp-OVA encodes OVA protein under the control of penp. pMG36e-CMV-penp-OVA encodes OVA protein under the control of CMV and penp. pNZ8149-penp-OVA encodes OVA protein under the control of penp. The L.L was cryopreserved in this laboratory. L.L and recombinant L.L carrying pMG36e were grown statically at 30°C in M17 broth supplemented with 10% glucose (GM17), recombinant L.L of pMG36e was grown in GM17 with 1 mg/ml erythromycin (Solarbio, China). Recombinant L.L carrying pNZ8149 was grown statically at 30°C in M17 broth supplemented with 10% lactin, recombinant L.L of pNZ8149 were grown in M17 with lactin and 50 μg/ml ampicillin (Solarbio, China).
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6

PPCP Detection in Feedwater

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The 10 PPCP standards, namely, sulfadiazine (SDZ), sulfamethoxazole (SMZ), tetracycline (TC), oxytetracycline (OTC), ciprofloxacin (CIP), ofloxacin (OFX), erythromycin (ERY), roxithromycin (ROX), ibuprofen (IBU), and NAX, were purchased from Solar-bio (China). Each PPCP was added into the feedwater at 200 ng/L. PPCPs were first dissolved with methanol and then added to the feedwater. The feedwater and PPCPs were prepared daily and mixed thoroughly in the feed tank. PPCPs were detected using the Waters ACQUITY UPLC H-class-Xevo TQ MS triple quadrupole MS/MS spectrometer equipped with an electrospray ionization source (Waters, USA). The detailed detection process was referred to our previous publication3 (link).
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7

Antibiotic Resistance Profiling of LAB

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The standard disk diffusion assay was used to determine the sensitivity or resistance of LAB to conventional antibiotics. Paper disks containing ampicillin (10 μg), penicillin (10 μg), amoxycillin (10 μg), norfloxacin (10 μg), levofloxacin (5 μg), gentamicin (120 μg), streptomycin (10 μg), amikacin (30 μg), and erythromycin (15 μg), which were purchased from Solarbio Technology Co., Ltd. (Beijing, China), were employed for the antibiotic resistance tests (Lee et al., 2014 (link)). From the MRS broth culture of each one of the test strains, 100 μL was mixed with 8 mL of liquid MRS agar, over-layered on a pre-solidified agar plate and allowed to solidify, and then disks were aseptically placed onto the center of plates using sterile forceps. The plates were incubated for 48 h at 30°C in an anaerobic chamber. The results were recorded according to the interpretive category defined by the Clinical and Laboratory Standards Institute (CLSI) (Sharma et al., 2017 (link)). The tests were carried out in triplicate.
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8

Bacterial Isolate Preparation and Culture Protocol

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The L. monocytogenes isolate used, with designated strain name “100”, was previously isolated from a milk sample. Previous experiments in our laboratory identified this as a serotype 1/2a strain with strong biofilm and suspended aggregate formation ability. R. insidiosa ATCC 49129 was purchased from the American Type Culture Collection (ATCC). Both strains were stored at −80 °C in tryptic soy broth (TSB; Hope Bio-Technology, Qingdao, China) containing 40% glycerol. Before all experiments, frozen cells were activated and separated on tryptic soy agar plates (TSA; Hope Bio-Technology, Qingdao, China) for 24 h at 37 °C. Then one colony was transferred into TSB overnight at 37 °C, and the cell concentration was adjusted to 108 colony-forming units (CFU)/mL. The concentration of bacteria used in each experiment was 108 CFU/mL, unless otherwise specified. E. coli DH5α (Takara Bio Inc., Otsu, Shiga, Japan) was used as the standard plasmid host for cloning procedures and was grown in lysogeny broth (LB; Hope Bio-Technology, Qingdao, China) broth and agar. Ampicillin (100 μg/mL) (Biofroxx, Einhausen, Germany) or erythromycin (3 μg/mL) (Solarbio, Beijing, China) were added to agar media or broth as required.
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9

Antibiotic Preparation and Bacterial Media

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Nine antibiotics were used in the present study. Tetracycline (active ingredient 95.0%, dissolvent: ddH2O, TET), ampicillin (USP grade, d: 1 mol/L HCl, AMP), ciprofloxacin (a.i. 90.0%, d: 1 mol/L NaOH, CPFX), sulfadiazine (a.i. 98.0%, d: DMSO, SUD), amikacin (a.i. 67.4%, d: ddH2O, AMI), oxyTetracycline (a.i. 95%, d: 0.1 mol/L HCl, OTC), kanamycin (a.i. 75.0%, d: ddH2O, KAN) and erythromycin (a.i. 94.1%, d: ddH2O, EM) were kindly provided by Beijing Solarbio Science & Technology Co., Ltd., Beijing, China; rifampicin (a.i. 98.0%, d: DMSO, RFD) was generously provided by Wuhan Pytbio Bioengineering Co., Ltd., Wuhan, China. The above antibiotics were dissolved and diluted with the corresponding solvents to 50 mg/mL, a stock solution was prepared, and the mixture was stored at 4 °C for subsequent dilution in this study. Additionally, tryptone soybean agar medium (TSA) was used for the isolation and purification of bacteria; nutrient broth agar medium (NA) was used for the propagation of bacteria; 15% glycerol–nutrient broth medium (15% glycerol–NB) was used for the cryopreservation of bacteria; 0.3% agar–NB was used for the determination of bacterial motility; and Luria–Bertani medium (LB) and Luria–Bertani agar medium (LA) were used for the determination of bacterial resistance to antibiotics.
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