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13 protocols using methanol

1

Antioxidant Assays and Zebrafish Analyses

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The fatty acids methyl esters (FAMEs) were purchased from Supelco Co. (Bellefonte, PA, USA). The standards of L-ascorbic acid (≥99%), gallic acid (>97.5%), DPPH (2,2-diphenyl-1-picrylhydrazyl), TPTZ (2,4,6-tripyridyl-S-triazine, ≥98%), ABTS (diammonium salt of 2,2′-azino-bis(3-ethylbenzthiazolin-6-yl)sulfonic acid, >99.0%), and dichloro-dihydro-fluorescein diacetate (≥97%, DCF-DA) were purchased from Sigma-Aldrich (St. Louis, MO, USA).
Organic solvents (dimethyl sulfoxide (DMSO, p.a.), ethanol (p.a.), methanol (p.a.)), hydrochloric acid (HCl, p.a.), iron (III) chloride (FeCl3, p.a.), Folin–Ciocalteu reagent and NaHCO3 (p.a.) were obtained from Kemika (Zagreb, Croatia), while potassium persulfate (>98%) was purchased from Scharlab (Barcelona, Spain). Hydrogen peroxide (H2O2, 30%) was obtained from Alkaloid Skopje (Skopje, North Macedonia).
Acetonitrile with 0.1% (v/v) formic acid and water with 0.1% (v/v) formic acid, both hypergrade for HPLC-MS LiChrosolv®, were purchased from Supelco Co. (Bellefonte, PA, USA).
Zebrafish D. rerio adults of wild-type WIK strain were obtained from the European Zebrafish Resource Center of the Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany.
Used solvents were of HPLC grade and were obtained from J.T. Baker (Bridgewater, NJ, USA).
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2

Antioxidant Capacity Determination of Plant Extracts

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The antioxidant capacity of the extracts was determined using the DPPH method already described by Mensor et al. and Payet et al. [35 (link),36 (link)] and adapted to tested plant extracts. Plant extracts as described in the ORAC method were used (acetone-dissolved essential oils and absolute hydrosols) for the assay. An amount of 100 µL of methanol (Kemika, Zagreb, Croatia) and 200 µL of sample was pipetted into each well. Serial dilutions of samples were prepared by pipetting 100 µL from the first row with a multichannel pipette into the wells in the second row and so on to the last row, where 100 µL of the solution was ejected after mixing. In the first column, in 96-well plates, a blank sample was always added. For EOs, the acetone and methanolic solution were used as blank and for hydrosols, water and methanolic solution were used as blank. The calculation and presentation of the results were performed according to the method described in the previous research by Nazlić et al. [33 (link)].
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3

Comprehensive Analytical Standards for Lipid and Phytochemical Analysis

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All standards of fatty acid methyl esters were purchased from Sigma (St. Louis, MO, USA). Methanol, n-hexane, petroleum ether, chloroform, potassium iodide, Folin–Ciocalteu reagent, sodium carbonate, starch, concentrated sulphuric, nitric and hydrochloric acid (37%) were purchased from Kemika (Zagreb, Croatia). Anhydrous sodium sulphate and 2,2-diphenyl-1-picryl-hydrazyl (DPPH) were purchased from Sigma (St. Louis, MO, USA).
Sodium and potassium hydroxides in the form of pellets, chloroform and analytical standards (dihydrocholesterol, campesterol, stigmasterol, β-sitosterol, eicosanol, docosanol, tricosanol, tetracosanol, pentacosanol, hexacosanol, heptacosanol, octacosanol, squalene and (±)-α-tocopherol) were purchased from Sigma (St. Louis, MO, USA). Ethanol and a silylating mixture according to Sweeley were purchased from Fluka (Buchs, Switzerland).
Hydroxytyrosol, tyrosol, oleuropein, lutein and apigenin were purchased from Extrasynthese (Genay, France). Caffeic acid and gallic acid were purchased from Sigma (St. Louis, MO, USA). Standard stock solutions of each compound were 1 mg/mL in Methanol.
All mineral standards were purchased from Merck (Darmstadt, Germany) and diluted to the appropriate obtained concentration.
All standards stored at +4 °C in amber vials and in a dark place until analysis.
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4

Micronuclei Analysis in Lymphocytes

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After taking 10 µL of cell culture for cytotoxicity testing, the remaining lymphocytes were cultivated in 5 mL RPMI 1640 (Invitrogen, Paisley, UK), adding 1 mL of fetal bovine serum (Gibco, Paisley, UK), 0.1 mL of phytohemagglutinin, 100 IU penicillin (Sigma, St. Louis, USA) and 100 IU streptomycin (Sigma-Aldrich, Munich, Germany) and incubated in Falcon chamber (BD Bioscience, California, USA) at 37 °C and 5% of CO2. At the 44th hour of cultivation, cytochalasin B was added to the cell culture at a concentration of 6 µg/mL in order to stop cytokinesis. At 72 hours of cultivation, cultures were centrifuged for 10 min at 600 rpm, the supernatant was discarded and cells were resuspended in 5 mL of fixative acetic acid (Kemika, Zagreb, Croatia) and methanol (Kemika, Zagreb, Croatia), w/w 1:3. Cells were transferred to microscopic glass, air-dried and stained with 5% Giemsa for 10 min. Analysis was performed by using a light microscope (Olympus CX 40, Olympus, Tokyo, Japan) under magnification of 1000x. For each material and elution period, 1000 binuclear lymphocytes were analyzed for micronuclei content, nuclear buds and nucleoplasmic bridges.
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5

HPLC Analysis of Faropenem in Urine

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The analytical standard of FF (Sigma-Aldrich, Steinheim, Germany) and internal standard CAP (Dr Ehrenstorfer, Augsburg, Germany) were used. HPLC-grade acetonitrile, methanol and water were provided by Merck (Darmstadt, Germany). Phosphoric acid (85 wt% in water) of analytical grade was purchased from Kemika (Zagreb, Croatia).
The methanol stock solution of FF was diluted to 20.0, 15.0, 10.0, 7.5, 5.0, 2.5, 1.0, 0.5, 0.1 and 0.05 µg/mL by adding component A of the mobile phase for obtaining the calibration curve. The appropriate volumes for each dilution were also added to blank urine to prepare urine FF standards ranging from 0.05 to 20.0 µg/mL. The concentration of internal standard CAP in all calibrators was 10.0 µg/mL.
Frozen urine samples were first thawed at room temperature and then centrifuged (Centric 322A, Tehtnica Železniki d.o.o., Železniki, Slovenia) at 4500 rpm for 15 min before sample treatments. The 500 µL of a urine sample was spiked with 0.1 mL of the internal standard stock solution and diluted with component A of the mobile phase. Samples were then vortexed (Assistent Reamix 2789, Karl Hecht GmbH, Fritzens, Germany) for 1 min and filtered using a regenerated cellulose filter (pore size 0.45 μm, Agilent Technologies, Waldbronn, Germany).
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6

Tart Cherry Jam Preparation

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Tart cherries were purchased at a local market, pits were removed, and flesh was used for the preparation of jams. The following chemicals were used: Potassium chloride, sodium acetate, hydrochloric acid, methanol, sodium carbonate, sodium bisulfite, Folin-Ciocalteu reagent were purchased from Kemika (Zagreb, Croatia). Trolox, 2,2’-azinobis (3-ethylbenzothiazoline sulfonic acid) (ABTS) and 2,2-diphenyl-1-picrylhydrazil (DPPH) were purchased from Sigma-Aldrich (St. Louis, MO, USA).
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7

Antioxidant Evaluation of Citrus Fibers

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Hydrochloric acid, acetic acid, methanol, sodium carbonate, iron chloride, ammonium acetate and Folin–Ciocalteu reagent were purchased from the manufacturer Kemika (Zagreb, Croatia). Trolox was purchased from Sigma (Darmstadt, Germany). 2,2’-azinobis (3-ethylbenzothiozolinesulfonic acid) (ABTS) and 2,2-diphenyl-1-picrylhydrazyl (DPPH) were purchased from Fluka (Darmstadt, Germany). 2,4,6,-tri (2-pyridyl)-s-triazine (TPTZ), gallic acid, procyanidin B2 and myrtenol were purchased from Sigma, Germany. Neocuproine and copper chloride are products of Gram-mol Zagreb, Croatia). Sucrose was purchased from Gram-mol (Zagreb, Croatia), and maltose and trehalose were obtained from Hayashibara doo (Nagase group, Tokyo, Japan). Citrus fibers were obtained from Biesterfeld AG (Zagreb, Croatia).
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8

Novel Compounds Inhibition Assay

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Inhibition potency of novel compounds was evaluated for recombinant human AChE (prepared as described earlier25 (link) and kindly donated by Prof Palmer Taylor, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California at San Diego, La Jolla, USA) and BChE isolated from human plasma (kindly donated by late Dr Douglas Cerasoli and Dr David Lenz, USAMRICD, Edgewood, MD). The inhibition mixture contained a 0.1 M phosphate buffer, pH 7.4, enzyme, tested compound, and reagent, 5,5'-dithiobis(2-nitrobenzoic acid) (DTNB, 0.3 mM; Sigma Chemical Co., St. Louis, MO, USA). Enzyme activity was measured upon addition of substrate, acetylthiocholine (ATCh, 0.2 or 0.1 mM; Sigma Chemical Co., St. Louis, MO, USA) by the Ellman method26 (link) at 25 °C and 412 nm, on a Tecan Infinite M200PRO plate reader (Tecan Austria, GmbH, Salzburg, Austria). Due to the low solubility, a stock solution of the tested compounds was prepared in DMSO or methanol (Kemika, Zagreb, Croatia), and a corresponding solvent was in controls as well. The IC50 values were determined from at least three experiments by a nonlinear fit of the compound concentration logarithm values vs. % of enzyme activity using Prism6 software (GraphPad Prism 6 Software, San Diego, USA).
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9

Antioxidant Capacity Evaluation Protocol

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Trolox, 2,4,6,-tri (2-pyridyl)-s-triazine (TPTZ), gallic acid, procyanidin B2 and myrtenol were purchased from Sigma-Aldrich (St. Louis, MO, USA). Hydrochloric acid, acetic acid, methanol, sodium carbonate, iron chloride, ammonium acetate and Folin-Ciocalteu reagent were purchased from Kemika (Zagreb, Croatia). 2,2′-azinobis (3-ethylbenzothiozolinesulfonic acid) (ABTS) and 2,2-diphenyl-1-picrylhydrazyl (DPPH) were purchased from Fluka (Buchs, Switzerland). Neocuproine and copper chloride were obtained from Gram-mol (Zagreb, Croatia). Sucrose was purchased from Gram-mol (Zagreb, Croatia), while trehalose was obtained from Hayashibara doo (Okayama, Japan). Citrus fibers were obtained from Biesterfeld AG (Zagreb, Croatia).
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10

Analyzing Antioxidant and Lipid Properties of Propolis

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All chemicals to investigate the lipidemic properties, the antioxidant capacity, and the analytics of propolis were purchased from Sigma-Aldrich Chemical Co. (St. Louis, MO, USA) except ethanol, methanol, potassium acetate, potassium hydroxide, and sodium carbonate, which were purchased from Kemika (Zagreb, Croatia) or from Merck, Darmstadt, Germany (AlCl3 and 2,4-dinitrophenylydrazine). Perkin Elmer Lambda 25 spectrophotometer (Perkin Elmer, Waltham, MA, USA) was used for the absorbance measurements.
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