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7 protocols using pbs tx

1

Cell Fixation and Permeabilization Protocol

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Cells were first washed in PBS, and then fixed for 10 min at room temperature in a solution of 4% PFA prepared in PBS. Cells were again extensively washed, and subsequently blocked for 1 h in 1% bovine serum albumin (BSA; Sigma, A7030) prepared in Banker’s PBS [140 mM NaCl (Sigma, S9888), 15 mM phosphate buffer] [35 ] with 0.1% Triton X-100 (PBS-Tx; Sigma, T9284) for 1 h at room temperature.
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2

Visualizing Drosophila Neuromuscular Junctions

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Transgenes were expressed using D42-GAL4, and third-instar wandering larvae were dissected, with internal organs removed and the skin pinned out and fixed in 4% formaldehyde (Sigma-Aldrich) for 90 min at room temperature. Larval skins were then washed in 0.1% Triton X (Sigma-Aldrich) in phosphate-buffered saline (PBS-Tx; Thermo Fisher Scientific) prior to blocking in 5% goat serum, 3% horse serum and 2% bovine serum albumin (BSA; Sigma-Aldrich) in 0.1% PBS-Tx. Skins were incubated with goat anti-horseradish peroxidase (1:1000; ICN/Cappel), conjugated to fluorescein isothiocyanate. Skins were washed in 0.1% PBS-Tx and put through an ascending glycerol series (50%, 70%, 90% and 100%) before being mounted in Vectashield (Vector Laboratories) and imaged. Neuromuscular junctions (NMJs) on Muscle 4 from Segments A3–5 were imaged using a Leica SP2 scanning confocal microscope using the 488 argon laser. Maximum projections of Z stacks were generated for morphometric analysis; bouton size and interbouton axon width were measured using ImageJ with the assessor blinded to the sample number.
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3

Whole-Mount Immunofluorescence Staining Protocol

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For whole‐mount stainings, animals were relaxed in a 1:1 7.14% MgCl2 × 6H2O and ASW solution for 15–20 min, fixed in 4% formaldehyde (made from paraformaldehyde) in 1× phosphate buffered saline (PBS) for 1 hr at room temperature (RT) and washed with PBS‐Tx (PBS with 0.1% Triton X‐100, Sigma‐Aldrich) for 1 hr. Specimens were blocked for 1 hr at RT with BSA‐Tx (PBS‐Tx with 1% bovine serum albumin, Carl Roth, Germany) and incubated overnight at 4°C in a rabbit anti‐5HT antibody (Sigma‐Aldrich) diluted 1:2,000 in BSA‐Tx (data from antibody staining not shown here). After being washed with PBS‐Tx for 2 days, specimens were incubated in tetramethylrhodamine‐conjugated phalloidin (P1951; Sigma‐Aldrich) and the secondary fluorescein isothiocyanate‐conjugated (FITC) swine anti‐rabbit antibody (Dako, Denmark), both diluted 1:250 in BSA‐Tx for 1 hr at room temperature in darkness. Subsequently, specimens were rinsed with PBS‐Tx for 3 days at RT and three nights at 4°C in darkness. Finally, they were mounted in Vectashield (Vector Laboratories). In total, 20 adult M. striatum and five adult C. monotrochum were stained.
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4

Brain Fixation and Staining Protocol

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Brains were fixed with 4% (w/v) paraformaldehyde (PFA, Roth, Karlsruhe, Germany) solution and 0.4% (w/v) Lucifer yellow for enhanced background (Lucifer Yellow CH dilithium salt, Sigma-Aldrich, München, Germany) in phosphate buffered saline [PBS; NaCl (37 mM), KCl (2.7 mM), Na2HPo4 (8 mM), KH2Po4 (1.4 mM), adjusted to pH 6.7 using diluted HCL] or a mixture of 1.3% (w/v) PFA and 0.7% (v/v) glutaraldehyde (GA, Sigma-Aldrich, München, Germany) in PBS for at least 4 h. Subsequently, the brains were washed three times in PBS for 10 min each, dehydrated in ascending ethanolic solution series [50, 70, 90, 99, and 100% (v/v), each for 10 min], cleared in methylsalicylate (Roth, Karlsruhe, Germany) for 10 min, and mounted on a special object slide (a metal plate of 0.5 mm thickness with a central hole and cover slips on both sides) in methylsalicylate. Additionally, brains stained with Neurobiotin were permeabilized for 2 h in PBS containing 0.5 or 1% (v/v) Triton X (PBS-TX, Sigma-Aldrich, München, Germany) and incubated overnight at 4°C in 0.05% (w/v) indocarbocyanine (Cy3) or indodicarbocyanine (Cy5) coupled streptavidin (Dianova, Hamburg, Germany) 1:100 in PBS-TX containing 0.1% (w/v) sodium chloride (NaCl) for enhancement. The following day, the brains were washed at room temperature several times (for at least 2.5 h) in PBS, dehydrated and mounted as described above.
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5

Immunohistochemical Detection of PV and PNN

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At adulthood, brain sections were washed in phosphate buffer saline (PBS) and then incubated for 1 h in 10% normal donkey serum (NDS; Abcys, Paris, France) in PBS with Triton X-100 (PBS-Tx; Sigma-Aldrich, San Luis, MO, USA). Afterwards, they were incubated for 48 h at 4°C with the primary reagents cocktail, diluted in PBS-Tx, and 5% NDS. The primary reagents cocktail consisted of guinea pig anti-PV antibody (1:9,500, Synaptic Systems, Gottingen, Germany), and Wisteria floribunda agglutinin (WFA; 1:710, Sigma-Aldrich, San Luis, MO, USA) for the detection of PNN (Härtig et al., 1992 (link)). After washing, sections were incubated for 2 h at room temperature with matching fluorescently labeled secondary reagents also diluted in PBS-Tx: A488-conjugated avidin (1:400, Invitrogen, Waltham, MA, USA) and CF555 donkey anti-guinea pig secondary antibody (1:400, Biotium, Fremont, CA, USA). Finally, sections were washed in PB 0.1 M, mounted on slides, and coverslipped using a fluorescence mounting medium (Dako North America Inc., Santa Clara, CA, USA).
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6

Immunohistochemical Analysis of GFAP Expression

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Immunohistochemistry was carried out using the approach previously reported by Diene et al. [24 (link)]. Following a 10-minute incubation with 3% H2O2, sections were blocked for 15 minutes at room temperature with 2% bovine serum albumin (BSA) in PBS containing 0.4% Triton X-100 (PBSTx, Sigma Chemical Co., USA), and then incubated for 48 hours at 4°C with polyclonal glial fibrillary acidic protein (GFAP) antiserum raised in rabbit (Z0334 Dako, 1:500, UK). After numerous washes with PBS-Tx, the sections were incubated at room temperature for 2 hours with biotin-conjugated goat anti-rabbit IgG secondary antibody (Amersham, 1:50, UK). After washing again, sections were incubated with horse radish peroxidase (HRP)-conjugated streptavidin at 37°C for 15 min. At the end of incubation, sections were stained by 3,3-diaminobenzidine (DAB, K3467, Dako) at room temperature for 15 min in the dark. All sections were examined under a light microscope (Olympus IX70, Olympus Optical Co. Ltd, Japan). Image J software was used to perform semi-quantitative densitometric analysis on the intensity of GFAP immunoreactivity.
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7

Immunostaining of GFP-labeled Tissues

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Dilutions of the antibodies used in immunostaining are given below and in Table 1. Tissues were dissected in PBS (phosphate-buffered saline, pH7.8) and fixed in 4% buffered formaldehyde for 1 hour at room temperature. Fixed tissues were washed in PBS-TX (PBS with 1% Triton X-100, Sigma, St. Louis, MO), incubated in 10% normal donkey serum (Jackson ImmunoResearch, West Grove, PA; Cat. no. 017-000-001 RRID:AB_2337254) for up to 6 hours, and then in 1:1,000 rabbit anti-GFP (Molecular Probes (Invitrogen), Eugene, OR; and converted back to TIFF file format. The image files presented in this paper will be made available on Virtual Fly Brain ( http://www.virtualflybrain.org), RRID:SCR_004229
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