The largest database of trusted experimental protocols

5 protocols using taqman primers

1

Quantitative Analysis of Large T Antigen mRNA

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated from cultured cells using TRI reagent (Sigma-Aldrich, St. Louis, MO) per the manufacturer’s instructions. Two micrograms of RNA was converted to cDNA using RevertAid H minus reverse transcriptase (Thermo Scientific, Waltham, MA) per the manufacturer’s instructions. Viral large T antigen (LT-Ag) mRNA was quantified by quantitative PCR (qPCR) with FastStart Universal Probe Master (ROX) mix (Roche) using an ABI PRISM 5700 sequence detection system (Applied Biosystems, Foster, CA) using a forward primer (5′-AGGAATTGAACAGTCTCTGGG-3′), reverse primer (5′-GTCATCGTGTAGTGGACTGTG-3′), and TaqMan probe (5′-AGAGCCCTGGAAGCCGGTT-3′) (Integrated DNA Technologies, Coralville, IA). Validated TATA box-binding protein (Tbp) gene TaqMan primers from Integrated DNA Technologies were used as a housekeeping control gene for normalization of LT-Ag mRNA threshold cycle (CT) values. A standard curve of known copy number for LT-Ag mRNA was performed using a plasmid containing a cloned LT-Ag mRNA amplicon.
+ Open protocol
+ Expand
2

Quantifying Inflammatory Cytokine Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was then extracted from cells using TRIzol reagent, as per the manufacturer’s instruction (Invitrogen, Carlsbad, CA). cDNA was synthesized using 1 μg of total RNA using a Maxima first-strand cDNA synthesis kit, as per the manufacturer’s instructions (ThermoFisher Scientific, Rockford, IL). Quantitative RT-PCR was conducted in a StepOnePlus instrument (Applied Biosystems, Grand Island, NY, USA) using cDNA for pro-inflammatory cytokines and chemokines, Tnf-α, ll-1β, Il6, Cxcl1, and Cxcl2 genes. TaqMan primers were purchased from Integrated DNA Technologies (Coralville, lA). The quantification of gene expression was determined by the comparative ΔΔCT method. Expression levels in the test samples were normalized to those of endogenous reference β-actin levels. Data are mean ± SD fold change.
+ Open protocol
+ Expand
3

Quantifying mRNA Expression in Respiratory Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
To quantify APOA1BP mRNA in human bronchial epithelial cells and the mRNA for Il4, Il13, Il33 and Muc5ac in mouse lung homogenates, total RNA from each sample was processed for RT-qPCR as previously described (8 ). In brief, samples were treated with RNA-STAT-60 (TelTest), and reverse-transcribed with Oligo-dT and SuperScript II kit (Life Technologies). qPCR was performed with TaqMan PCR Master Mix and TaqMan primers obtained from Integrated DNA Technologies, Coralville, IA). The relative amounts of mRNA were normalized to those of human or mouse housekeeping gene hypoxanthine phosphoribosyltransferase-1 (HPRT1 or Hprt1).
+ Open protocol
+ Expand
4

Quantification of Nrf2 and NQO1 in Kidney

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from the kidney cortex using an RNAeasy mini kit ( Cat# 74104, Qiagen, Hilden, Germany) and used for cDNA synthesis by using RT2 First Strand Kit (Cat# 330404, Qiagen, Hilden, Germany). The polymerase chain reaction for NQO-1 and β-actin was performed with commercially available TaqMan primers (Integrated DNA Technologies, Coralville, IA). The following sequences of the primers were used: NQO-1 (forward: 5’-CCATGTACTCTCTTCAGG-3’ and reverse:5’-GCCAATGCTGTAAACCAGTTG-3’) and β-actin (forward:5’-GATTACTGCTCTGGCTCCTAG-3’ and reverse: 5’- GACTCATCGTACTCTCCTGCTTG-3’).
Immunoblotting in the renal cortical homogenates was performed using the standard lab method as detailed previously (22 (link)). Briefly, tissue homogenates were centrifuged at 12000 rpm for 10 minutes at 4 °C and the supernatant was solubilized in Laemmli buffer, resolved by SDS-PAGE, and transferred to polyvinylidene difluoride membranes at 4°C. The membranes were blocked with 5% nonfat dry milk and incubated with antibodies against Nrf2 (1:500, Cat# 16396-1-AP, Proteintech) and NQO-1 (1:500, Cat# bsm-52830R, Bioss) and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) antibody (1:1000, Cat# 2118, Cell Signaling) followed by corresponding horseradish peroxidase conjugated secondary antibodies.
+ Open protocol
+ Expand
5

Quantitative Analysis of miRNA Levels

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from tissue or cells using Trizol reagent (Invitrogen, Thermo Fisher Scientific) followed by reverse transcription for cDNA synthesis from mRNA or miRNA using iScript cDNA Synthesis Kit (Bio-Rad, Hercules, CA, USA) and TaqMan® MicroRNA Reverse Transcription Kit (Thermo Fisher Scientific), respectively. The miRNA levels were determined with TaqMan® primers (Integrated DNA Technologies, Coralville, IA, USA) as indicated by quantitative real-time PCR using TaqMan® Fast Universal PCR Master Mix (Thermo Fisher Scientific). All qPCR reactions were run using the Applied Biosystems ABI7900HT PCR machine.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!