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Thermo orbitrap fusion lumos mass spectrometer

Manufactured by Thermo Fisher Scientific

The Thermo Orbitrap Fusion Lumos mass spectrometer is a highly sensitive and accurate instrument designed for advanced proteomics and metabolomics analysis. It utilizes Orbitrap technology to provide high-resolution mass spectrometry capabilities, enabling detailed characterization of complex molecular samples.

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3 protocols using thermo orbitrap fusion lumos mass spectrometer

1

Negative Ion CE-MS/MS of Small Molecules

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CE experiments were performed using an Agilent 7100 (Agilent Technologies) coupled to a Thermo Orbitrap Fusion Lumos mass spectrometer (Thermo Fisher Scientific). The separation was conducted in a bare fused silica capillary with 50 μm ID and 60 cm length, initially conditioned with 5 M sodium hydroxide for 15 min, followed by water for 10 min and electrolyte for 30 min. The final electrolyte consisted of 10% acetic acid (v/v) with 10% (v/v) isopropanol. For separation, a potential of − 30 kV was applied to the capillary inlet. Samples were injected hydrodynamically with 100 mbar for 80 s. The sheath liquid consisted of isopropanol:water (50:50 v/v) with 0.5% (v/v) formic acid. A distance of 3.0 mm between the emitter tip and transfer capillary was chosen, giving the highest signal intensities. The Orbitrap mass spectrometer was operated in negative ion mode with 1200 V electrospray potential, full scan from 75 to 510 m/z, 30,000 resolving power, 64 ms accumulation time, 1E5 AGC target, 45% RF lens, and 4 microscans. MS/MS experiments were conducted with quadrupole isolation in a 1.6-Da window, fragmentation by high collision dissociation (stepped 15, 30, and 45%), and Orbitrap detection with first mass 50 m/z, AGC target 1E4, and 54 ms maximum injection time.
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2

Nano-LC-MS/MS Proteomic Workflow

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Tryptic peptides were separated on an UltiMate 3000 RSLCnano System (Thermo Scientific, USA) at a flow rate of 300 nL/min using a 120 min gradient from 5% ACN, 0.1% formic acid to 45% ACN, 0.1% formic acid followed by a washing step at 100% ACN. Each of the 3 independent biological replicates was measured as technical duplicates. Mass spectra were collected on a Thermo Orbitrap Fusion Lumos mass spectrometer (Thermo Fisher Scientific). Each analysis was operated in data dependent top-speed mode with dynamic exclusion set at 30 s and a total cycle time of 3 s. Full scan MS spectra were acquired in the Orbitrap at a resolution of 120000 (at m/z 200) with an automatic gain control ion target value of 4e5 and a maximum injection time of 50 ms. The most intense precursors with charge states of 2-7 and intensities greater than 5e3 were selected for MS/MS experiments using higher-energy collisional dissociation (HCD) with 27 % collision energy. Isolation was performed in the quadrupole with an automatic gain control ion target value of 2e3 and a maximum injection time of 300 ms.
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3

Nanoscale LC-MS/MS Workflow for Proteomics

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Tryptic peptides were separated on an UltiMate 3000 RSLCnano System (Thermo Scientific, USA) at a flow rate of 300 nL/min using a 120 min gradient from 5% ACN, 0.1% formic acid to 45% ACN, 0.1% formic acid followed by a washing step at 100% ACN. Each of the 3 independent biological replicates was measured as technical duplicates. Mass spectra were collected on a Thermo Orbitrap Fusion Lumos mass spectrometer (Thermo Fisher Scientific).
Each analysis was operated in data dependent top-speed mode with dynamic exclusion set at 30 s and a total cycle time of 3 s. Full scan MS spectra were acquired in the Orbitrap at a resolution of 120000 (at m/z 200) with an automatic gain control ion target value of 4e5 and a maximum injection time of 50 ms. The most intense precursors with charge states of 2-7 and intensities greater than 5e3 were selected for MS/MS experiments using higher-energy collisional dissociation (HCD) with 27 % collision energy. Isolation was performed in the quadrupole with an automatic gain control ion target value of 2e3 and a maximum injection time of 300 ms.
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