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4 protocols using cy3 conjugated donkey anti goat antibody

1

Immunofluorescence Analysis of Trigeminal Ganglia

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For immunofluorescence analysis, rats were deeply anesthetized with sodium pentobarbital (80 mg/kg, i.p.) and transcardially perfused them with 100 ml of heparinized normal saline, followed by 500 ml freshly prepared fixative containing 4% (w/v) paraformaldehyde in 0.1 M phosphate buffer (pH 7.4). The TG sections were permeabilized with 50% ethanol for 30 min, blocked with 10% normal donkey serum (NDS) for 30 min, and incubated overnight in the primary antibodies [goat polyclonal antibody to GRP78 (sc1050, 1:200, Santa Cruz Biothechnology), rabbit monoclonal antibody to p-eIF2α (#3597, 1:500, Cell Signaling) and the neuronal marker, microtubule associated protein (MAP2; #ab11267, 1:1,000, Abcam)]. TG sections were washed with 0.01 M phosphate buffered saline (PBS, pH 7.4) and incubated with 2% NDS for 30 min, and incubated with secondary antibodies [Cy3-conjugated-donkey anti-goat antibody, Cy3-conjugated-donkey anti-rabbit antibody and FITC-conjugated-donkey anti-mouse antibody (1:200 in PBS; Jackson Immunoresearch)] for 3 h. Finally, sections were rinsed with PBS, mounted on slides, and coverslipped with Vectashield (Vector, Burlingame, CA) solution. Microscopic observation was performed with an Exi digital camera (Q-Imaging Inc, Surrey, CA) attached to a Zeiss Axioplan 2 conventional fluorescence microscope (Carl Zeiss Inc, Jena, Germany).
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2

Immunofluorescence Assay for Detecting Viral Proteins

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The following antibodies were used: mouse anti-HA antibody (1:500, BioLegend), rabbit anti-Giantin antibody (1: 1000, Biolegend), rabbit anti-PDI antibody (1:50, CST), goat anti-Olig2 antibody (1:200, R&D), rabbit anti-GFAP antibody (1:200, Proteintech), rabbit anti-IBA1 antibody (1:250, Invitrogen), mouse anti-Neu-N antibody (1:100, Millipore), rabbit anti-HCoV-OC43-N antibody, Cy3-conjugated donkey anti-rabbit antibody (1:500, Jackson), Alexa Fluor 488-conjugated donkey anti-mouse antibody (1:500, Jackson), Alexa Fluor 555-conjugated donkey anti-mouse antibody (1:500, Jackson), Alexa Fluor 488 anti-HA.11 Epitope Tag Antibody (1:500, Biolegend), Cy3-conjugated donkey anti-goat antibody (1:500, Jackson).
17CL-1 Cells infected with the virus (MOI = 0.1) were fixed using 4% PFA in PBS, then the cells permeabilized with 0.2% Triton X-100 in PBS. Cells were incubated with primary antibody at RT for 1 h, and then incubated with second antibody at RT for 1 h, the nucleus was stained with DAPI. After three times wash with PBS, the coverslips were mounted on glass slides. Cells were examined by confocal microscopy (ZEISS).
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Assessing Blood-Brain Barrier Integrity

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To detect BBB leakage in 3-NP-injected rats, experimental rats (n = 3 animals) were deeply anesthetized on days 3 and 7 after 3-NP injection and intravenously administered fluorescein isothiocyanate (FITC)-albumin (2 mg diluted in 0.1 ml saline; Sigma-Aldrich) via the tail vein. One hour after injection, animals were deeply anesthetized and perfused transcardially with fixative, as described above. Coronal cryostat sections (25-μm-thick) from animals injected with FITC-albumin were incubated overnight at 4°C with a mixture of rabbit polyclonal antibody against GRP78 (1:2000; Abcam) and one of following antibodies: goat polyclonal antibody against Iba1 (1:500; Abcam), mouse monoclonal antibody against RECA1 (1:200; Bio-Rad), or mouse monoclonal antibodies against GFAP (1:700; Millipore). This was followed by 2-h incubation with appropriate secondary antibodies as follows: Cy3-conjugated donkey anti-goat antibody (1:2000; Jackson ImmunoResearch), Cy3-conjugated goat anti-mouse antibody (1:2000; Jackson ImmunoResearch), or Alexa Fluor 647-tagged donkey anti-rabbit antibody (1:300; Thermo Fisher). Counterstaining of cell nuclei was carried out using DAPI for 10 min.
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4

Corneal Neovascularization Visualization Protocol

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Corneas were excised on day 14 after suture-induced CNV and washed with phosphate-buffered saline. The corneal epithelium was removed after incubation with 20 mM EDTA for 60 min at 37 °C, fixed in acetone for 15 min at 20–22 °C, and blocked in 2% bovine serum albumin for 60 min. Corneas were then double-stained for CD31 and lymphatic vessel endothelial hyaluronan receptor LYVE-1 as described previously by using overnight incubation with goat anti-mouse CD31 FITC (1:100; Santa Cruz Biotechnology, Dallas, TX, USA) and goat anti-mouse LYVE-1 (1:400; AF2125, R&D Systems, MN, USA)41 (link),54 (link). A Cy3-conjugated donkey anti-goat antibody (1:2,000, Jackson ImmunoResearch Laboratories, West Grove, PA, USA) was then added as the secondary antibody and incubated for another 2 h. Stained whole mount corneas were mounted in Vectashield with 4,6-diamidino-2-phenylindole (Vector Laboratories Inc., Burlingame, CA, USA). Images of stained whole mount corneas were taken under a fluorescence microscope (BZ-X71000, KEYENCE, Osaka, Japan). The fractions of total corneal areas covered by blood and lymphatic vessels were then calculated by using ImageJ (National Institutes of Health, Bethesda, MD, USA; available at http://rsb.info.nih.gov/ij/index.html)41 (link),55 (link).
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