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8 protocols using rc dctm protein assay kit

1

Protein Extraction and Analysis from Regenerating Liver Tissues

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The regenerating liver tissues stored in liquid nitrogen were ground into fine
powder and then suspended in extraction buffer (7 M urea, 2 M thiourea, 4%
CHAPS). Next, the suspension was vortex-mixed for 1 h at 4 °C, and subsequently
centrifuged at 20,000 x g for 1 h at 4 °C. The supernatants
were collected and stored at –80 °C for further use. The protein concentration
was assessed with the commercial RC DCTM Protein Assay Kit according
to the manufacturer’s instructions (BIO-RAD, USA). Protein samples, 50 μg, were
separated by electrophoresis on 12% SDS/PAGE gels and subsequently
electrophoretically transferred to polyvinylidene difluoride membranes
(Millipore). The membranes were blocked with 5% non-fat milk, washed, and
subsequently probed with antibodies against 14-3-3β/α, γ, ζ/δ, σ, ε, η, τ/θ (all
1:1000) and GAPDH (1:2000) (Sangon Biotech Co. Ltd., Shanghai, China)overnight
at 4 °C. After being washed, the membranes were incubated with horseradish
peroxidase-conjugated secondary antibodies (Sangon Biotech Co. Ltd., Shanghai,
China), detected with an enhanced chemiluminescence detection kit (Boster
Corporation, China) and then imaged in an ImageQuant LAS 4000 mini (GE
Healthcare Bio-Sciences Corporation) system.
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2

Telomerase Activity Quantification via TRAP Assay

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Telomerase activity was measured using the telomere repeat application protocol (TRAP) assay with the TeloTAGGG Telomerase PCR ELISA PLUS kit (Roche Diagnostics, Mannheim, Germany). This kit provides a way to perform a highly sensitive photometric enzyme immunoassay to detect “telomerase activity” [5 (link)]. We used 3 μg of total protein in the PCR reaction to measure telomerase activity and determined protein concentrations using an RC DCTM protein assay kit (Bio-Rad, CA, USA).
Telomerase adds telomeric repeats (TTAGGG) to the 3’-end of the biotin-labeled synthetic P1-TS-primer. These elongation products, as well as the Internal Standard (IS) included in the same reaction vessel, are amplified by PCR using the primer P1-TS and the anchor-primer P2. The PCR products are split into two aliquots, denatured and hybridized separately to digoxigenin (DIG)-labeled detection probes specific for the telomeric repeats (P3-T) y. Immobilized amplicons are then detected with an antibody against horseradish peroxidase-conjugated digoxigenin (Anti-DIG-HRP) so that telomerase activity can be detected from PCR measurements.
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3

Western Blot Analysis of SOCE Proteins

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Protein extraction from PBMC samples was performed using RNA/DNA/Protein Purification Plus Kit (Norgen Biotek, Ontario, Canada). Proteins were measured using the RC DCTM protein assay kit (Bio-Rad, USA) in Multiskan MS plate reader (Labsystems, Vantaa, Finland) and the concentration was calculated by plotting standard curve. Protein samples (20–60 μg) subjected to SDS-PAGE using 8% polyacrylamide gels and transferred to Amersham Hybond PVDF membranes by either wet or semi-dry transfer systems. The membranes were blocked with 10% FBS in Tris buffered saline containing 0.1% Tween (TBS-T) for 1 h and incubated overnight at 4°C with primary antibodies against STIM2 (1:200, Cell Signaling Technology, Cat No. 4917), ORAI1 (1:500, Alomone labs, Cat No. ACC-060), ORAI2 (1:500, Alomone labs, Cat No. ACC-061), CaV1.3 (1:500, Alomone labs, Cat No. ACC-005), CaV2.3 (1:500, Alomone labs, Cat No. ACC-006) and GAPDH (1:3000; Merck Millipore, Cat No. ABS16). After intensive washing with TBS-T, the membranes were further incubated with horseradish peroxidase-conjugated secondary antibody (1:3000; Cell Signaling Technology, Cat No. 7074) for 2 h. Further, membranes were washed intensively and developed for detection of immunoreactive protein bands using ECL Prime Western Blotting System (GE Healthcare, RPN2232). Bands were visualized in ChemiDocMP imaging system (Bio-Rad).
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4

Western Blot Analysis of Glipr1 Protein

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Cells were lysed using radioimmunoprecipitation assay (RIPA) buffer [1% NP-40 (v/v), 20 mM HEPES, 150 mM NaCl, 10% glycerol (v/v), 2 mM Na3VO4, 10 mM Na4P2O7, 2 mM NaF, and 1x cOmpleteTM EDTA-free Protease Inhibitor Cocktail (Roche)]. The protein concentration in each cell lysate was determined using the RC DCTM Protein Assay Kit (Bio-Rad), according to manufacturer’s instructions. Equal concentrations of total protein were separated by SDS-PAGE using the Mini-PROTEANTM III System (Bio-Rad). Proteins were then transferred from the gel to a nitrocellulose 0.45 μm membrane (Bio-Rad) using the Mini Trans-Blot® Electrophoretic Transfer Cell (Bio-Rad). Membranes were probed with specific antibodies against mouse Glipr1 (1:250; #AF4468, R&D Systems), human GLIPR1 (1:500; #H00011010-A01, Abnova) and Hsp90/HSP90 (1:2,500; #7947, Santa Cruz Biotechnology). These were then visualised using DyLight-680/800-conjugated secondary antibodies (1:10,000; Thermo Fisher Scientific) and an Odyssey® CLx Imager (LI-COR). Densitometry was performed using ImageJ software (http://fiji.sc).
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5

Protein Pellet Resuspension and Quantification

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The resuspension of the protein pellets was done in gel loading buffer (10 mM Tris, 1 mM ethylenediaminetetraacetic acid, 5% β-mercaptoethanol, 5% sodium dodecyl sulfate (SDS), 10% glycerol, pH 6.8) and total protein concentration was measured using a RC DCTM Protein Assay kit (Bio-Rad laboratories, Hercules, CA, USA) following manufacturer's protocol.
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6

Submandibular Gland Protein Extraction

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A portion of submandibular gland was homogenized in urea/thiourea buffer (7 M urea, 2 M thiourea, and 0.1% Triton X-100) in a proportion of 50 mg tissue/mL, using a Teflon pestle on a motor-driven Potter-Elvehjem glass homogenizer. The protein content was assayed in the submandibular gland extracts using a commercial RC-DCTM Protein Assay kit (Bio-Rad®, Hercules, CA, USA), according to the manufacturer’s instructions and using bovine serum albumin (BSA) as the protein standard.
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7

Protein Extraction from Ae. aegypti Mosquitoes

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A total of 20 adult female and male Ae. aegypti mosquitoes were homogenised in 600 µL of CytoBusterTM extraction reagent (Sigma, Darmstadt, Germany) in a mini bead beater using 0.5 mm zirconia beads at 50 rpm for 5 min at room temperature (RT). The pellets were then centrifuged for 5 min at 16,000× g at 4 °C. The resultant supernatant was concentrated 6× using 5000 molecular-weight cut-off spin columns (MWCO) (GE Healthcare, Chicago, IL, USA) with centrifugation at 4000× g and 4 °C. Finally, a protease inhibitor (Sigma, Darmstadt, Germany) at a 1× final concentration was added to the protein extract, which was then stored at −20 °C. The protein extraction was performed with three biological replicates for the female and male Ae. aegypti groups.
The protein concentrations of the mosquito protein extracts were determined using an RCDCTM protein assay kit (Bio-Rad, Hercules, CA, USA) following the manufacturer’s protocol. As a standard, bovine serum albumin (BSA) that was serially diluted 10-fold from a 1 mg/mL stock solution was used. The absorbance at 750 nm was measured using the Spectromic Biomate 3 UV–visible spectrophotometer (Thermo Fisher Scientific, Waltham, MA, USA).
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8

Monosaccharide and Phenolic Composition Analysis

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The composition of neutral monosaccharides in each separated fraction obtained by anion-exchange chromatography was analysed with a high-performance liquid chromatography (HPLC) system (BioAssist eZ, Tosoh Co.) equipped with a PN-PAK C18 (3.0 × 75 mm) column using the ABEE method [8] . The content of phenolic compounds was estimated by the Folin-Denis method [9] . The protein level was measured by the RC DC TM protein assay kit (Bio-Rad Laboratories, Hercules, CA, USA). Fourier-transformed infrared spectrum of F5 was measured by the KBr pellet method using the Nicolet Nexus 670NT FT-IR apparatus (Thermo Fisher Scientific Inc., MA, USA).
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