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5 protocols using lf pvdf

1

Western Blot Immunodetection of Immune Checkpoint Proteins

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The cells were lysed in RIPA buffer (Pierce, 89900) with 1X protease and phosphatase inhibitor (Pierce, A32961). Lysates were sonicated in a Bioruptor™ (Diagenode, Denville, NJ, USA) on ice for 8 minutes (8 cycles of 30 s on, 30 s off). Protein concentration was determined using a Pierce BCA Protein Assay Kit (Thermo Fisher Scientific, 23225) according to the manufacturer’s protocol. Samples were mixed with NuPAGE LDS 4x loading gel (NP0007) and NuPAGE 10x reducing agent (NP0009), and boiled at 95 °C. Next, samples were loaded onto 4–20% (BioRad, 4561093) or 10% gels (BioRad, 4561033) and transferred to LF PVDF (BioRad, 170–4274). Membranes were blocked with LI-COR Biosciences (Lincoln, Nebraska, USA) Odyssey Blocking Buffer (927–40100). Bands were detected using Azure Biosystems (Dublin, California, USA) Imaging System c600. The antibodies used for immunoblotting included: PD-L1 (ProSci, 4059), PD-L2 (ProSci, 4063), CD70 (Abcam, ab175389), B7-H3 (ThermoFisher Scientific, PA551098), B7-H4 (Abbiotec, 250473), Galectin-9 (Abcam, ab9630), ICOS-L (Abcam, ab138354), alpha-Tubulin (Cell Signaling, 3873) and acetyl-alpha Tubulin (Cell Signaling, 3971).
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2

Western Blot Profiling of Epigenetic Regulators

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Isolated cell pellets were lysed in RIPA buffer (Pierce, 89900) with 1X protease and phosphatase inhibitor (Pierce, A32961). Lysates were sonicated in a Bioruptor™ (Diagenode, Denville, NJ, USA) on ice for 8 minutes (8 cycles of 30 s on, 30 s off). Protein concentration was determined using a Pierce BCA Protein Assay Kit (Thermo Fisher Scientific, 23225) according to the manufacturer’s protocol. Samples were mixed with NuPAGE LDS 4x loading gel (NP0007) and NuPAGE 10x reducing agent (NP0009), and boiled at 95 °C. Next, samples were loaded onto 4–20% (BioRad, 4561093) or 10% gels (BioRad, 4561033) and transferred to LF PVDF (BioRad, 170–4274). Membranes were blocked with LI-COR Biosciences (Lincoln, Nebraska, USA) Odyssey Blocking Buffer (927–40100) or 5% milk-PBS-Tween. Bands were detected using Azure Biosystems (Dublin, California, USA) Imaging System c600. The antibodies used for immunoblotting included: DNMT1 (Sigma, D4692), PD-L1 (ProSci, 4059), HDAC1 (Cell Signaling, 2062), HDAC2 (Cell Signaling, 2540), HDAC6 (Assay Biotech, C0026), acetyl-alpha Tubulin (Cell Signaling, 3971), alpha-Tubulin (Cell Signaling, 3873).
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3

Protein Quantification and Western Blot Analysis

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Cells were lysed in RIPA buffer (Pierce, 89900) with 1X protease and phosphatase inhibitor (Pierce, A32961). Lysates were sonicated at 4°C in a water bath Bioruptor™ (Diagenode) for 8 minutes (8 cycles of 30s on, 30s off). Next, samples were centrifuged at 4°C, 10,000xg for 10 minutes to remove cellular debris. Protein concentration was determined according to the Pierce BCA Protein Assay Kit protocol (Thermo Fisher Scientific, 23225). Samples were mixed with NuPAGE LDS 4x loading gel (NP0007) and NuPAGE 10x reducing agent (NP0009) then placed on a heating block at 100°C. Samples were loaded into a 4-20% (BioRad, 4561093) and transferred to LF PVDF (BioRad, 170-4274). Membranes were blocked with LI-COR Biosciences (Lincoln, Nebraska, USA) Odyssey Blocking Buffer (927-40100) for 2 hours at room temperature then incubated overnight at 4°C with the primary antibody, 1:1000 p53 (rabbit, Bethyl A300-247). After the overnight incubation, Beta-actin (mouse, Sigma A5441) was added, 1:3000, at room temperature for 20 minutes. Proteins were detected using the Azure Biosystems Imaging System c600. Processing of images was performed using the LI-COR Biosciences Image Studio software. The secondary antibodies used were AzureSpectra700 AC2128 and AzureSpectra800 AC2135.
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4

Whole-Lane Normalized Western Blot Protocol

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Total proteins were extracted using the Protein Extraction Reagent Type 4 (P4, Sigma‐Aldrich). Cells were sonicated with 10 pulses of 15 s at 45 W Labsonic 1510 Sonicator (Braun, Melsungen, Germany) and clarified by centrifugation for 10 min at 10 000 g. Protein concentration was determined by the Bio‐Rad Protein Assay, based on Bradford's method. Twenty micrograms of proteins were separated by SDS/PAGE (Novex Tris‐Glycine gels) according to the Laemmli protocol [22 (link)] and then transferred to nitrocellulose (0.22 μm; Bio‐Rad) or LF PVDF (0.45 μm; Bio‐Rad) by wet transfer and Towbin blotting buffer (50 mm Tris, 150 mm NaCl, 20% v/v methanol). Membranes were probed with the primary antibodies diluted in 5% w/v nonfat dry milk or 5% BSA in TBS‐T. The primary antibodies used in this study were anti‐HDAC2 (CST) and anti‐Lamin A/C (CST). The utilized secondary antibodies were Alexa Fluor 790 (Thermo Fisher Scientific). Immunoreactive bands were recorded using the enhanced chemiluminescence (Advansta, Menlo Park, CA, USA) or fluorescence acquisition by ChemiDoc Touch Imaging System (Bio‐Rad). The whole lane normalization (WLN) strategy was adopted in all western blot analyses using a trihalo compound for protein visualization [23 (link), 24 (link), 25 (link)]. Acquired images were analyzed by image lab software 5.2.1 (Bio‐Rad) [26 (link)].
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5

Immunoblotting of Transfected Na(v)1.4 Channels

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Nav1.4 cDNA plasmids were transfected into HEK293 cells 12–18 hr after plating at 70% confluency using standard calcium-phoshate reagents. 18–24 hr post transfection the HEK293 cells were washed twice with PBS and scraped in PBS supplemented with PMSF (0.1 mM final concentration)and Benzamidine (0.75 µM final concentration) and spun at 4000 g. The cell pellet was resuspended in solubilization buffer (50 mM Tris-HCl pH 7.4, 250 mM NaCl, 1% Triton, 0.5 µg/ml Pepstatin, 2.5 µg/ml Aprotinin, 2.5 µg/ml Leupeptin, 0.1 mM PMSF, 0.75 mM Benzamidine) on ice and Vortex Genied for 15mins at 4 C. Non-solubilized protein was removed by centrifugation at 20,000 g. Equal cell-lysate was loaded on a 3-15% gradient SDS-page in the presence of 1% 2 mercaptoethanol, separated at 55 V O/N and transferred to 0.45 µM LF PVDF (Bio-Rad, CA, USA). PVDF was immunoblotted using anti-Human influenza hemagglutinin (HA) antibody (1:2000; Biolegend, CA) in 2% NF milk and imaged on LI-COR Odyssey Imaging System (LI-COR, NE, USA).
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