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2 protocols using anti pfn1

1

Protein Expression Analysis in 2D and 3D Cultures

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Total cell lysate from 2D monolayer culture was prepared by extracting cells with modified RIPA buffer (50 mM Tris-HCl, pH 7.5, 150 mM NaCl, 1% NP-40, 0.25% sodium deoxycholate, 0.1% SDS, 2 mM EDTA) supplemented with 50 mM NaF, 1 mM sodium pervanadate, and protease inhibitors. Total cell lysate from 3D culture was prepared by incubating cells at 4 °C in the modified RIPA buffer supplemented with 0.5% SDS and protease/phosphatase inhibitor cocktail (Pierce). The extracts were clarified by centrifugation at 13,000 rpm for 30 min and the supernatant was used for immunoblotting. Sources of different antibodies were: anti-Pfn1 (Abcam), anti-phospho-FAK (Y397) (Invitrogen), anti-Smad3 (Biorad), anti-ERK1/2, anti-phospho-ERK1/2 and anti-phospho-Smad3 (S423/S425) (Cell Signalling), anti-Pfn2 and anti-FAK (Santa Cruz), and anti-GAPDH and anti-tubulin (Sigma-Aldrich) Immunoblotting concentrations for different antibodies were: 1:3000 for anti-Pfn1, anti-GAPDH and anti-tubulin; 1:500 for anti-Pfn2, anti-ERK1/2, anti-pERK1/2 and anti-FAK; and 1:1000 for anti-Smad3, anti-pSmad3 and anti-pFAK.
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2

Transgenic Mouse Model Analysis of ALS-linked PFN1 Mutations

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As described previously (Fil et al., 2017 (link)), transgenic (hPFN1WT and hPFN1G118V) mice were generated, and the selected mice with and without ALS-like symptoms were genotyped to determine the presence of the transgene. All the animal work was approved by UAMS IACUC (University of Arkansas for Medical Sciences, Institutional Animal Care and Use Committees) and carried out accordingly. Tissues used in this study were the tissue samples from mutant and wild-type PFN1 mice that were previously isolated as part of the research described in Fil et al. (2017) (link) and were stored for further use. To analyze the expression level of hPFN1 in the tissues from these mice, brain, spinal cord, liver, and leg muscles were isolated and stored at −80°C till use. Then the frozen tissues were thawed out on the ice, and the whole brain, spinal cord, liver, and leg muscles were homogenized with RIPA buffer. After estimating protein concentration, an aliquot was mixed with sample buffer (Invitrogen), heated at 90°C for 10 min, and run on 4%–12% Bis-Tris Gel (Invitrogen). Then the separated proteins were analyzed by western blotting. Anti-PFN1 and anti-β-actin (Sigma Aldrich) were the primary antibodies followed by appropriate secondary antibodies.
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