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6 protocols using colloidal coomassie blue g 250

1

Enzymatic Modification of Lupin Protein

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WPC was obtained from Davis Trading Co. Ltd. (Auckland, New Zealand), and LF (Lupinus angustifolius) was obtained from Nothing Naughty (Tirau, New Zealand). Precision plus protein™ dual colour standards and Criterion™ TGX™ precast sodium dodecyl-sulfate polyacrylamide gel electrophoresis (SDS-PAGE) gels were purchased from Bio-Rad (Hercules, CA, USA). AccQ.Tag reagent were purchased from Apollo Scientific (Manchester, UK). Other chemicals, including the amino acid standard (A9906, with the addition of asparagine and glutamine), acetic acid, aluminium sulphate, bromophenol blue, colloidal Coomassie Blue G-250, citric acid, dithiothreitol (DTT), ethanol, ferulic acid, glycine, phosphoric acid, sodium dodecyl sulphate (SDS), tri-sodium citrate, tris hydrochloride (Tris-HCl), and urea, were purchased from Sigma Aldrich (Darmstadt, Germany). The enzymes used in this experiment were commercial TG (100 U/g), ACTIVA obtained from Ajinomoto Co. Inc. (Tokyo, Japan), and two different laccases: (1) Rhus vernicifera (Laccase R or LR) (50 U/mg) and (2) Trametes versicolor (Laccase T or LT) (0.9 U/mg), both purchased from Sigma Aldrich (Darmstadt, Germany).
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2

Protein Quantification by Analytical Gels

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Analytical Gels were silver stained using PlusOne Staining kit, protein (GE Healthcare Lifescience) based on a simplified method. For preparative scale, the gels were stained by colloidal Coomassie blue G-250 (Sigma Chemical Co). After coloration, gels were scanned and quantified by computing scanning densitometry (ImagScanner III densitometer-GE Healthcare). A total of 4000 protein spots were discriminated on 2-DE (i.e., whose the volume was up than 300,000). All gel images were normalized to the total valid spot volume of each gel and included for statistical group matches as described below.
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3

Mitochondrial Proteome Analysis of NIH3T3 Cells

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Following mitochondrial Percoll gradient fractionation of NIH3T3 cells and SDS-PAGE, the gel was stained with Colloidal Coomassie Blue G250 (Sigma Aldrich) and the bands corresponding to 35 – 50 kDa were cut and sent to the PCB Proteomics Platform to proceed with mass spectrometry analysis. The related protocols can be found at http://www.pcb.ub.edu/homePCB/live/en/p1249.asp.
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4

Western Blot Analysis of Protein Extracts

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Dissected glands or brains were homogenized in 100 µl of SDS-PAGE loading buffer and boiled for 5 min. Appropriate amounts of extracts (between 0.2 and 6.0 brain and HG equivalent, respectively) were loaded on a vertical 10% SDS-PAGE gel and electrophoresed at 15 V/cm (horizontal gel system, PeqLab, Erlangen, Germany). Obtained gels were either stained with colloidal Coomassie blue G-250 (Sigma, St Louis, USA) or blotted onto nitrocellulose membrane (semidry system, 2 V/cm2, PeqLab). Blotting membranes were blocked overnight with 5% skimmed milk in Tris-buffered saline with Tween 20 TBST (10 mM Tris, pH = 7.4, 150 mM NaCl, 0.05% Tween 20). Primary antibodies were diluted in TBST as follows: rabbit affinity-purified α-BtRJPL (Kupke et al., 2012 (link)) 1:1,000, and goat α-actin (Santa Cruz, San Diego, USA) 1:500. Incubation varied from 3 hours to overnight. After washing 4×10 min with TBST, the blots were incubated for 1 hour with fluorescence-labeled secondary antibodies (anti-goat 680 and anti-rabbit 800; LI-COR Biosciences, USA) diluted 1:20,000 in TBST. After final washing 4×10 min with TBST, immunoreactive bands were detected by an Odyssey infrared imaging system (LI-COR Biosciences, USA).
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5

Protein Identification via 2D Gel

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For the identification of proteins in spots of interest, a separate preparative two-dimensional gel electrophoresis was performed using a total of 800 µg proteins per gel. Resolved protein spots were visualized by Colloidal Coomassie Blue G-250 (Merck, Darmstadt, Germany).
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6

Protein Identification via 2D-Gel Electrophoresis

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For the identification of proteins in the spots of interest, a separate preparative twodimensional gel electrophoresis was performed using a total of 800 µg of protein per gel.
Resolved protein spots were visualized using Colloidal Coomassie Blue G-250 (Merck, Darmstadt, Germany). Proteins identified with at least with 2 unique peptides (minimum peptide score: 15) were considered as a valid hit.
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