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Cyflow sl

Manufactured by Sysmex
Sourced in Germany, Japan

The CyFlow SL is a compact flow cytometer designed for clinical laboratory use. It provides automated analysis of cells and particles in liquid samples. The CyFlow SL measures various parameters, such as size, granularity, and fluorescence intensity, to characterize different cell populations.

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4 protocols using cyflow sl

1

Genome Size Determination by Flow Cytometry

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To assess genome size homogeneity, the DNA weight per nucleus (genome size; expressed in picograms [pg] ) was determined for each study population (see Online Resource table) using ow cytometry, based on a two-step procedure using Otto I and II buffers (Otto 1990 ). As its genome size (2C DNA = 3.38 pg) is close to that of the species studied, the common daisy Bellis perennis was used as an internal reference standard (Schönswetter et al. 2007 (link)). In each case, 1 cm 2 of fresh leaf tissue from the study species and from B. perennis were macerated together with a sharp blade and placed in a Petri dish containing 0.1 ml of ice-cold Otto I buffer (0.1 M citric acid monohydrate, 0.5% v/v Tween 20) for approx. 90 s, after which the suspension was ltered through a 42 µm nylon mesh. Nuclei within the ltered suspension were then stained with 1 ml of Otto II buffer (0.4M Na 2 HPO 4 .12H 2 O) supplemented with 1 ml of DAPI stock solution (DAPI 10 mg dissolved in 100 ml H 2 O) + 50 µl ß-mercaptoethanol (2 µL/mL). Each sample was then incubated at room temperature for 10 min and analysed using a Sysmex-Partec CyFlow SL equipped with a green solid-state laser ow cytometer (532 nm, 100 mW output power; Sysmex Partec GmbH, Görlitz, Germany).
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2

Assessing Plasmid DNA Repair in HEK293 Cells

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HEK293, stably transfected with DDB2Wt or DDB2PCNA- construct, were co-transfected with pmRFP-N2 (as a positive control), kindly provided by Professor Cardoso, and pEGFP-N1 or UV-pEGFP-N1 (as previously described) employing Effectene transfection reagent (Qiagen).
After 16 and 48 h, the cells were harvested from Petri dishes and centrifuged at 200 g for 3 min (Centrifuge 4236, Alc), the pellets were gently re-suspended on phosphate-buffered saline (PBS) for in vivo flow cytofluorimetry measurements (CyFlow® SL, Sysmex Partec GmbH). Only RFP positive cells were considered for the subsequent analysis in which the ratio between the mean fluorescence intensity (MFI) for the RFP and GFP protein were calculated. After normalization (MFI GFP/MFI RFP), relative expression of GFP protein was computed by comparing the normalized MFI of the UV-irradiated to the normalized MFI of unirradiated plasmid, thereby detecting the restored plasmidic DNA [14 (link), 15 (link)].
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3

Estimating Genome Size of P. paniculata

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Flow cytometric analysis was performed to estimate the size of the P. paniculata genome using CyFlow SL (Sysmex Partec, Japan). Three different organs (leaf, flower and inflorescence stem) from two different individuals were chopped up using a razor in nuclei extraction buffer (Sysmex Partec) and filtered through a 50 μm CellTrics filter (Sysmex Partec). Staining solution containing staining buffer, propidium iodide and RNase (Sysmex Partec) was added to samples. Arabidopsis thaliana leaves were used as an internal standard. The number of nuclei was measured using 488 nm blue lasers. A regression formula of genome size and peak intensities was constructed using A. thaliana, which has a genome size of 125 Mbp. Then, genome size of each P. paniculata sample was estimated from the regression formula.
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4

Genome Size Estimation of Tanacetum and Chrysanthemum

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The T. coccineum was grown from seed under field conditions for 6 months, and a leaf was obtained on the resulting plants. A 5 mm square section was excised from the leaf using a razor and treated with Quantum Stain UV and PI for DNA (Quantum Analysis), according to the manufacturer’s protocol. The genome size of T. coccineum was estimated using a CyFlow SL flow cytometer (Sysmex Partec). Segments from the leaves of T. cinerariifolium (wild type, 7.1 Gb) and C. seticuspe (3 Gb, cultivar: Gojo-0) [5 (link)] were also assayed as size references. The C. seticuspe Gojo-0 strain used in this study and related information are available from the National BioResource Project (https://shigen.nig.ac.jp/chrysanthemum/top.jsp (accessed on 26 October 2020)).
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