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6 protocols using ab2918

1

FKBP12 Western Blotting Protocol

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For western blotting of FKBP12, monoclonal RPE1 dCas9‐Kin14VIb and its parental polyclonal population were transfected with 20 nM of siRNA Luciferase (CGUACGCGGAAUACUUCGAdTdT) siRNA FKBP12 (AAACUGGAAUGACAGGAAdTdT) using HyPerFect (Qiagen). 72 h following transfection, cells were lysed in Laemmli buffer for 10 min at 100°C. Protein concentration was determined using a Lowry assay. Proteins were separated on a 15% SDS‐polyacrylamide (PAGE) by electrophoresis and transferred to a nitrocellulose membrane. The membrane was blocked with 5% milk in TBS‐0.01% Tween‐20 for 1 h, before being incubated with rabbit anti‐FKBP12 antibodies (Abcam ab2918) at 4°C overnight. Horseradish peroxidase (HRP)‐conjugated goat anti‐rabbit secondary antibodies (Bioke, cat. no 7074) were then added for 2 h at room temperature. Chemiluminescence was detected using the WesternBright ECL system (Advansta K‐12045‐D20) and visualized using an Amersham Imager 600. The membrane was subsequently stripped by a 1‐h incubation with PBS + 0.02% sodium azide and reprobed with mouse anti‐Histone 3 antibodies (Abcam, ab1791) as a loading control. For the loading control, HRP‐conjugated goat anti‐mouse secondary antibodies (Biorad, 170‐6516) were used.
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2

FKBP12 Protein Labeling in C2C12 Cells

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Mouse myoblast C2C12 cells (ATCC) (2.0 × 105 cells) were cultured in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% foetal bovine serum (FBS, Gibco), penicillin (100 units/ml), streptomycin (100 mg/ml), and amphotericin B (250 ng/ml), and incubated in a 5% CO2 humidified chamber at 37 °C. The cells were then incubated in FBS-free DMEM containing reagent (1 μM) at 37 °C for 120 min. As control experiments, the labelling was conducted in the presence of Rapamycin (10 μM). For western blot analysis, after washing twice with PBS, the cells were lysed with RIPA buffer (pH 7.4, 25 mM Tris–HCl, 150 mM NaCl, 0.1% SDS, 1% Nonidet P-40, 0.25% deoxycholic acid) containing 1% protease inhibitor cocktail set III (Calbiochem). The lysed samples were collected and centrifuged (15 200 × g, 10 min at 4 °C). The supernatants were mixed with 1/4 volume of 5× sample buffer (pH 6.8, 312.5 mM Tris–HCl, 25% sucrose, 10% SDS, 0.025% bromophenol blue) containing 250 mM DTT and incubated for 1 h at 25 °C. The samples were subjected to SDS-PAGE and electro-transferred onto an Immun-Blot PVDF membrane (Bio-Rad). The labelled FKBP12 was detected by chemiluminescence analysis using Streptavidin-HRP conjugate, rabbit anti-FKBP12 antibody (Abcam, ab2918, 1:1000) and anti-rabbit IgG-HRP conjugate (CST, #7074 S, 1:5000).
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3

Western Blot Analysis of FKBP12 and GFP

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Whole cell lysates were prepared from asynchronous populations of cells. Western blot analysis was performed using the following antibodies: rabbit anti-FKBP12 polyclonal (1:2,000; ab2918; Abcam), rabbit anti-GFP polyclonal (1:10,000; a gift from B. Black), and mouse anti-tubulin monoclonal DM1α (1:10,000; Sigma-Aldrich).
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4

Immunohistochemical Analysis of Protein Expression

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Tissue specimens were sectioned to a thickness of 4 micrometers. Slides were immersed in 1X citrate-based unmasking solution and subjected to microwave heating until boiling commenced. Subsequently, slides were maintained at a temperature just below boiling (between 94°C and 97°C) for 15 minutes. Following this, slides were allowed to cool off on the benchtop for 40 min before staining using the UltraSensitive™ SP (Mouse/Rabbit) IHC Kit (Maxim, China). The antibodies utilized for immunohistochemistry were as follows: anti-HMGA1 (diluted 1:500, sc-393213, Santa Cruz), anti-phospho-S6 ribosomal (diluted 1:1200, #81736, Cell Signaling Technology), and anti-FKBP12 (diluted 1:1200, ab2918, Abcam).
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5

Antibodies and Reagents for mTOR Signaling

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Antibodies against HMGA1 (ab129153), HMGA1-ChIP Grade (ab252930), and FKBP12 (ab2918) were purchased from Abcam. Antibodies against HMGA1 (sc-393213) and FKBP12 (sc-133067) and mouse IgG (sc-2025) were purchased from Santa Cruz Biotechnology. Antibodies against S6 ribosomal protein (#64108) and phospho-S6 ribosomal protein (#81736) and rabbit IgG (#2729), mTOR (#2983), phospho-mTOR (#5536), eIF4EBP1(#9452), and phospho-eIF4EBP1(#9456) were purchased from Cell Signaling Technology (Danvers, MA). Antibody against beta actin (81115-1-RR) was purchased from Protein Tech (Wuhan, China). Rapamycin was obtained from MedChemExpress (HY-10219).
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6

Quantifying Cre-Mediated Protein Expression in Malaria Parasites

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Western blot analysis was performed to evaluate the DiCre protein expression level and the efficacy of Cre excision of the loxP pair. Parasite-infected erythrocytes were collected at 24 and 48 h after RAP administration, treated with 0.1% saponin, and proteins were extracted with 1% Triton X-100 in PBS containing protease inhibitor cocktail (cOmplete™; Sigma-Aidrich). SDS-PAGE and Western blot were performed as described [16] (link). Membranes were probed for 1 h at room temperature (RT) with mouse anti-Cre monoclonal antibody (1:1000; 2D8; Sigma-Aldrich), rabbit anti-FKBP12 antibody (1:1000; ab2918; Abcam, Cambridge, UK), mouse anti-Myc monoclonal antibody (1:1000; 9B11; Cell Signaling Technology, Danvers, MA, USA), or rabbit anti-PyAMA1 polyclonal antibody (1:300) [20] (link). Secondary hybridization was with HRP-conjugated anti-mouse IgG or anti-rabbit IgG (1:12000; Promega) for 1 h at RT. Bands were detected as described [16] (link). The band intensities were quantified with ImageJ software [21] .
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