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Laemmli buffer 4x

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Laemmli buffer 4x is a concentrated solution used in protein electrophoresis to prepare protein samples for analysis. It contains the necessary components to denature, reduce, and solubilize proteins prior to separation by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE).

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5 protocols using laemmli buffer 4x

1

THP-1 Cell Activation and Protein Analysis

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THP-1 cells were seeded in the presence of 100 nM PMA for 3 days. The cells were then washed in PBS and incubated in RPMI-Glutamax with 1% FBS and 0.05 mM β-mercaptoethanol. After 6 hours, lipopolysaccharides from E. coli O26:B6 (Sigma) was added at a final concentration of 100 ng/mL for 18 hours. The cells were then washed again in PBS and incubated for 6 hours in custom RPMI media (Thermo Fisher) in which sodium bicarbonate concentrations were adjusted to pH 8.0, 7.5, 6.5 or 6.0 at 5% CO2. Media supernatants were added to cold ethanol 100% (1:3 ratio) and kept at −20°C O/N. The next day, tubes were centrifuged 15 minutes at 15000 xg at 4°C, the supernatant was carefully decanted and pellets were washed with ethanol 70%. Supernatant was aspirated and the pellets were let to dry. Finally, pellets were dissolved in RIPA buffer supplemented with 1X protease inhibitor cocktail (Roche Applied Science) and Laemmli buffer 4X (BioRad, Mississauga, CA) (1:1) and boiled for 10 minutes at 95°C. THP-1 cells were lysed in cold RIPA buffer. Proteins were quantified and western blot were performed as described above.
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2

Lipolytic Activity Assay for Secreted CalB

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Lipolytic activity of secreted CalB was determined using a p-nitrophenyl butyrate (pNPB)-based assay (2635–84–9, Merck, Darmstadt, Germany). The reaction buffer was as follows: 300 mM Tris-HCl pH 7 containing 4.83 mM p-NPB and 0.93% acetone. After pre-heating the buffer at 30°C, 900 μL of reaction buffer were mixed with 100 μL of culture supernatant. P-nitrophenol color development at 405 nm was monitored in a Specord 200 Plus spectrophotometer (Analytik Jena GmbH, Jena, Germany) at 30°C for 2 min. One activity unit was defined as the amount of enzyme needed to release 1 μmol p-nitrophenol · min-1 under assay conditions. RSD was below 4%.
Further protein analyses of fed-batch supernatant samples were performed by SDS-PAGE. For sample preparation, 15 µL of supernatant were mixed with 5 µL of loading buffer (Laemmli buffer 4x + β-mercaptoethanol in 10:1 relation, Biorad, Hercules, CA, USA) and incubated at 95°C for 5 min. After cooling down, 15 µL were loaded into 4%–15% Mini-PROTEAN TGX Precast Protein Gels (Biorad, Hercules, CA, United States) and run at 120 V for about 80 min. The visualization and analyses of the gel was performed using Image Lab (Biorad, Hercules, CA, United States).
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3

One-Dimensional Gel Electrophoresis of Trichuris trichiura Proteins

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T. trichiura EE (10 μg/well) and FE (10 μg/well) were diluted in Laemmli buffer (4X) (Bio-Rad) (1:1), denatured at 100°C for 5 min and separated by one dimensional gel electrophoresis (1-DE) in Mini-Protean TGX precast acrylamide gels (4–15% gradient, 10 well comb, 50 μL/well) (Bio-Rad) under reducing conditions with 80–120 V in a Mini-PROTEAN Tetra System electrophoresis system (Bio-Rad) as previously described [32 (link)]. Samples were run simultaneously with molecular weight markers (4 μL) (Precision Plus Protein Dual Color Standards, Bio-Rad).
The gels were stained with Coomassie brilliant blue to analyze the protein patterns and the most prominent bands excised for proteomic analysis. Before staining, the gels were fixed (50% methanol and 10% glacial acetic acid) overnight with gentle agitation (solution changed once after 1 h). Gels were stained (0.1% Coomassie brilliant blue R-250, 50% methanol and, 10% glacial acetic acid) for 20 min with gentle shaking before destaining (40% methanol and 10% glacial acetic acid) with repeated changes of the solution until the gel background was clear. Gels were stored at 4°C in 5% glacial acetic acid.
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4

Comprehensive Cell Viability and Apoptosis Assay Protocol

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MEM (minimum essential medium), DMEM (Dulbecco’s Modified Eagle Medium), FBS (Fetal bovine serum), nonessential amino acids, trypsin-EDTA, MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide), BSA (bovine serum albumin), 5-(N-ethyl- N-isopropyl)amiloride (EIPA), ECL™ Prime Western Blotting Detection Reagent, and 3-methyladenine were from Sigma-Aldrich/Merck. DMEM FluoroBrite, lysotracker red, and Lucifer yellow (LY) were from ThermoFisher Scientific. z-VAD and fumonisin B1 (FB1) were from Enzo Life Sciences. Annexin V-FITC early apoptosis detection kit was from Cell Signaling. Laemmli buffer 4x and 30% acrylamide/Bis 37.5:1 were from Bio-Rad. lysotracker red and PDVF membranes were from Roche. Antibodies: β-actin (mouse) was from Sigma; LC3II (rabbit) from MBL; Caspase 3 (rabbit), Akt (rabbit), pAkt (rabbit), AMPK (rabbit), pAMPK (rabbit), S6 (rabbit), and pS6 (rabbit) were from Cell Signaling. HRP-secondary antibody goat anti-Mouse IgG was from Thermo Fisher Scientific (Barcelona, Spain). HRP-secondary antibody goat anti-Rabbit was from Sigma (Fontenay-sous-Bois, France).
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5

Aβ-induced ER Stress Pathway Analysis

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ISRIB (> 98% purity) was from Sigma-Aldrich. Aβ1–42 was purchased from California Peptide. Culture media and IR dye-conjugated secondary antibodies were from Li-Cor. Streptavidin-HRP, Streptavidin-AF594, ProLong anti-fade reagent, Tris-glycine gels, and Aβ42 ELISA kits were from Invitrogen. Anti-puromycin antibody (12D10) was from EMD Millipore. Anti-ATF4, anti-GFAP, anti-eIF2Bα, anti-eIF2Bε, anti-eIF2γ, anti-β-actin antibodies, and BDNF ELISA kits were from Abcam. Anti-eIF2α-P(Ser51), anti-eIF2α and anti-β-tubulin were from Cell Signaling Technology. 6E10 antibody was from Enzo Life Sciences. Biotin-conjugated anti-Iba1 was from Wako Fujifilm. BCA protein assay kit was from Thermo Fisher. Laemmli Buffer (4x) was from Bio-Rad. Alkyne-conjugated biotin and Protein Reaction Buffer kit were from Click Chemistry Tools.
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