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212 protocols using dulbecco s modified eagle s medium

1

Cell Culture Protocols for DIvA and U2OS

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DIvA cells were cultured at 37 °C in DMEM (Dulbecco's Modified Eagle's Medium, 4.5 g l -1 glucose, supplemented with L-pyruvate; Lonza,) supplemented with 10% foetal bovine serum (Lonza), 4 mM L-glutamine (Sigma-Aldrich), 1 mM puromycin (Gibco) and 1% antibiotics (Lonza). U2OS osteosarcoma cells were cultured at 37 °C in DMEM (Dulbecco's Modified Eagle's Medium; Lonza) supplemented with 10% foetal bovine serum (Lonza), 4 mM L-glutamine (Sigma-Aldrich) and 1% antibiotics (Sigma-Aldrich).
Both cell lines were grown under standard conditions. The U2OS cell line was purchased from ATCC, and DIvA cells were provided by G. Legube. All experimental protocols were approved by the guidelines of the University of Szeged and the Medical Research Council.
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2

Manipulating RTN-1C in C2C12 Myocytes

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C2C12 cells (less than 10 passage) were cultured in Dulbecco’s modified Eagle’s medium (Lonza, Switzerland) supplemented with 10% fetal bovine serum, 100 μg/mL streptomycin, and 100 units/mL penicillin, at 37 °C and 5% CO2 in a humidified atmosphere (GM). To induce differentiation, cells were cultured in Dulbecco’s modified Eagle’s medium (Lonza) supplemented with 2% horse serum (DM).
To silence RTN-1C, cells were transfected with 10-nM siRNA specific for mouse RTN-1C (SR420071, Origene, USA) for 72 h. Scramble siRNA, which does not target any known genes from any species, was used as negative control.
To over-express RTN-1C, human RTN-1C cloned in pCDNA 3.1 Zeo(þ) vector was used [28 (link)].
Transfections were performed using Lipofectamine 2000 (Invitrogen, UK) according to the manufacturer’s instructions.
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3

Culturing A549 Cells in DMEM

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A549 cells were maintained as a monolayer culture in T-25 flasks (Greiner Bio-One, Germany) at 37 °C and 5% CO2 in Dulbecco's Modified Eagle's Medium (Lonza Verviers SPRL, Belgium) supplemented with 10% (v/v) fetal bovine serum (PAA, Brazil). Penicillin/Streptomycin (Lonza Verviers SPRL, Belgium) were used at the concentrations of 100 units/ml and 100 µg/ml, respectively.
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4

Isolation and Culture of Mouse HSCs

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The animal experiments were approved by the animal care and use committee of Vrije Universiteit Brussel (Permits 13-212-1 and 14-212-4) and the institution’s guidelines for the care and use of laboratory animals in research were strictly followed. The HSC isolation method for male BALB/c mice (aged 15–20 weeks) was performed as previously described18 (link). Total c-Jun N-terminal kinase (JNK) mice were provided by Professor Christian Trautwein and were originally described in Zhao et al.19 (link) and Cubero et al.20 (link). After isolation, a fraction of the cells was collected for RNA or cytospinned and the rest was cultured in Dulbecco’s modified Eagle’s medium (Lonza, Braine-l’Alleud, Belgium) supplemented with 10% fetal bovine serum (Lonza) at 37 °C in a humidified atmosphere with 5% CO2. Treatment with 5 and 10 µM JNK V inhibitor (Calbiochem, Merck, Overijse, Belgium) was started from the moment of seeding and refreshed every day. VG-1 (Gift from Prof. Coldham) and NMDi-14 (R&D systems) treatments were initiated from the moment of seeding. Solvent controls were treated with 0.1% dimethyl sulfoxide. Bright-field images were taken with an Axioskop light microscope (Carl Zeiss, Zaventem, Belgium).
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5

HeLa Cell Culture Protocol

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HeLa cells were obtained from the American Tissue Culture Collection. Cells were grown in Dulbecco’s modified Eagle’s medium (Lonza) supplemented with 10% (v/v) of fetal-calf serum (Lonza). Cells were maintained at 37 °C in a humidified atmosphere containing 5% (v/v) CO2.
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6

Cytokine-Induced HuH-7 Cell Culture

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HuH-7 cells were cultured in Dulbecco's modified Eagle's medium (Lonza, Cologne, Germany) supplemented with 10% fetal bovine serum (Invitrogen, Carlsbad, CA, USA), 4 mM L-glutamine (Lonza) and 100 U/ml penicillin/streptomycin (Biochrom KG, Berlin, Germany) in a humidified incubator at 37 °C and 5% CO2 atmosphere. For treatment, 10 ng/ml recombinant human cytokine IL-6 or 5 ng/ml TGF-β (both Peprotech, Hamburg, Germany) were used. Cell lines are tested regularly for mycoplasma contamination in the laboratory.
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7

HeLa Cell Culture with CNP Exposure

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HeLa cells (a gift from T. L. Cover, Vanderbilt University, Nashville, TN) were maintained in Dulbecco's modified Eagle's medium supplemented with 10% fetal bovine serum and 2 mM L-glutamine (all from Lonza, Basel, Switzerland) at 37 °C under a humidified atmosphere of 5% CO 2 in air. Cells were seeded at 1.2 × 10 7 in 75 cm 2 flasks. After 48 h, the cell monolayers were washed and incubated with fresh medium containing the CNP at a concentration of 200 µg mL -1 for 15 min to 24 h, as specified case by case. The CNPs formed a stable suspension in the culture medium and no sedimen-tation was observed, even at the end of the longest incubation time.
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8

Transient Transfection and Luciferase Assay

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The HeLa cells were grown in Dulbecco's modified Eagle's medium (Lonza), and the SK-N-BE(2)C cells were maintained in RPMI 1640 without l-glutamine (Lonza). Each medium was supplemented with 10% fetal calf serum (PAA Laboratories), 100 units/ml penicillin (Lonza), 100 μg/ml streptomycin (Lonza), and 2 mml-glutamine (Lonza).
The cells were transiently transfected or co-transfected by means of lipofection (FUGENE HD, Promega) as described previously (21 (link), 25 (link), 26 (link)) using 1.5 × 105 SK-N-BE(2)C or 5 × 104 HeLa cells.
In mammalian two-hybrid experiments, 80 fmol of each expression vector were combined with 160 fmol of pG5LUC plasmid. The luciferase assay was carried out using the Dual-Luciferase reporter assay system (Promega) as described previously (26 (link), 27 (link)). All of the transfections were performed in triplicate, and each construct was tested in at least three independent experiments using different batches of plasmid preparation. The numbers of independent transfection experiments are indicated in the figure legends.
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9

Measles Virus Isolation and Genome Sequencing

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Vero cells expressing human CD150 (Vero-hCD150) were a kind gift from Prof Yusuke Yanagi, Kyushu University, Japan. The cells were grown in Dulbecco’s modified Eagle’s medium (Lonza) supplemented with 10% FBS, penicillin, streptomycin and l-glutamine (D10F medium)40 (link). A human B-lymphoblastoid cell line (BLCL) was cultured in RPMI-1640 medium supplemented with 10% FBS, penicillin, streptomycin and l-glutamine (R10F medium)41 (link). The cell line was generated in-house by Epstein-Barr virus-transformation of PBMC of a healthy adult donor. Human melanoma Mel-JuSo cells transfected with the full-length MV-Edmonston fusion (F) or hemagglutinin (H) genes (Mel-JuSo-F or Mel-JuSo-H)42 (link) were grown in R10F medium. Virus isolations were performed by inoculation of Vero-hCD150 cells or BLCL with PBMC or virus transport medium from swab samples in two-fold serial dilutions (eight replicates per dilution). Viral cytopathic effects were monitored over a period of 3–7 days and a virus titre was calculated by determining the 50% endpoint using the formula of Reed and Muench43 . One of the virus isolates (MVi/Dodewaard.NLD/29.13; genotype D8) was used for full genome sequencing as described previously (GenBank accession number: MG912592)44 (link). This isolate is available via the European Virus Archive [https://www.european-virus-archive.com].
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10

Transient Transfection of HEK293T Cells

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Human Embryonic Kidney 293T cells were maintained in Dulbecco’s Modified Eagle’s Medium (Lonza) supplemented with 10% Fetal Calf Serum (Sigma) and penicillin-streptomycin (Life Technologies). Transfection in 6 well plates was performed for 48 hours using 2.0 ug of plasmid and Lipofectamine 2000 (Life Technologies) following the manufacturer’s guidelines.
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