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Accuri cytometer

Manufactured by BD
Sourced in United States, France

The BD Accuri cytometer is a flow cytometry instrument designed for analyzing and sorting cells. It provides accurate and reliable data on various cellular properties, including size, granularity, and fluorescence. The Accuri cytometer is a compact and user-friendly device suitable for a range of applications in life science research and clinical settings.

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54 protocols using accuri cytometer

1

Apoptosis and Cell Cycle Analysis

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A flow cytometry approach was applied to determine cell apoptosis and cell cycle. An annexin V-FITC/propidium iodide cell apoptosis detection kit (BD Biosciences, USA) was used to detect cell apoptosis. U251 and U87 cells were trypsinized and re-suspended in 500 μL binding buffer, then 1 μL annexin V-FITC and 1 μL propidium iodide were added to the cells for 25 minutes of incubation. Cells were washed once with the binding buffer and then analyzed on the Accuri Cytometer (BD Biosciences). The cell cycle assay kit (Beyotime, China) was used to assess the cell cycle. U251 and U87 cells were fixed with 75% anhydrous ethanol overnight in the fridge. After RNase digestion, the samples were stained using propidium iodide for 30 minutes in the dark and then analyzed on the Accuri Cytometer (BD Biosciences).
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2

Neutrophil Surface Marker Expression and DNA Fragmentation Analysis

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Neutrophils were separated from whole blood of runners on Histopaque-1077 (d = 1.077) gradients (Sigma-Aldrich, St. Louis, MO, USA) (Boyum et al. 1968). The neutrophils obtained from the blood sample athletes were counted in a Neubauer chamber under an optical microscope (Nikon, Melville, NY, USA). Neutrophils (1x106 cells / ml) were incubated with antibody conjugated to fluorescein isothiocyanate (FITC), phycoerythrin (PE) or allophycocyanin (APC) for 30 minutes in the dark at room temperature. The expression of surface molecules ICAM-1 (CD54—FITC), L-selectin (CD62—FITC), TNFR-1 receptor (CD120b—PE) and Fas (CD95 –APC) were analyzed by flow cytometry. The fluorescence was determined by flow cytometry at wavelengths 530/30 nm (FITC) 660/20 nm (APC) or 695/40 nm (PE) (BD Accuri cytometer) and ten thousand events per sample were acquired in histograms.
DNA fragmentation was analyzed by flow cytometry (BD Accuri cytometer) after DNA staining with propidium iodide, according to the method described by Nicoletti et al. (1991) [18 (link)].
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3

Evaluating VLP-based Immunogenicity and Toxicity

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To determine if VLP-based therapies can induce immune cell proliferation, PBMCs from different non-allergic volunteers were isolated using a Lymphoprep density gradient. PBMCs were then seeded in flat-bottom 96-well plates at a concentration of 2·105 cells/mL and incubated with VLP-Pru p 3 or VLP-Complex (20 ng/µL VLP; 5 ng/µL Pru p 3 or complex). Complex (5 ng/µL) was used as a positive control to induce proliferation. After 5 days (37°C, 5% CO2), cellular concentration was calculated using a BD Accuri cytometer. SI for each stimulus was calculated as the variation of cell concentration over time normalized with the variation of the control.
To evaluate the immunotoxicity of the formulations, human monocytes (THP1 cells; In vivogen) were seeded in flat-bottom 96-well plates at a concentration of 1·106 cells/mL and incubated with the same stimuli as described above. 10-hidroxycamptothecin (0.25 ng/µL) was used as a positive control to induce apoptosis. After 24 h, cells were stained with annexin V-FITC (1:100, Merck) and PI (1:100, Merck) for 10 min (RT). Samples were analyzed using a BD Accuri cytometer and results were processed using FCS Express 7 Plus software. Unstained samples were used as background controls.
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4

CLL Cell Viability under Targeted Treatments

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CLL cell viability was inspected in four experimental settings. In the first setting, viability of CD19+ CLL cells isolated from patients +12 was compared to viability of CLL cells isolated from patients without +12. CLL cells were cultured in RPMI + 10% FBS, and viability was tested at 24 and 48 h. In a second setting, +12 CLL cells were silenced using Notch2 siRNA or a non-targeted negative control siRNA, and viability was tested at 24 and 48 h. In a third setting, CLL cells were treated with venetoclax, and in some settings, with a combination of venetoclax and Notch2 siRNA. Lastly, CLL cells were treated with AMG-176 100 or 300 nM either in combination or not with venetoclax. Apoptotic cell death was analyzed using Annexin V-Fluorescein isothiocynate (FITC) and propidium iodide (PI) staining (eBioscience, San Diego, CA, USA). Events were acquired using a BD Accuri cytometer (Becton Dickinson) and then analyzed by FlowJo Software (RRID : SCR_008520).
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5

Cytokine Production by Activated Neutrophils

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Isolated neutrophils (1 × 106/mL) were suspended in RPMI 1640 medium supplemented with 10% fetal bovine serum, cultured at 37°C in a 5% CO2 atmosphere, and incubated in the absence and presence of 5 μg/mL LPS (Sigma Aldrich). After 18 hours of cell culture, the supernatant was collected and stored at −80°C until the cytokine measurements were performed. The supernatant levels of IL-1β, TNF-α, IL-6, IL-8, and IL-10 were determined using the BD Human Inflammatory Cytokine cytometric Bead Array Kit or the BD Accuri cytometer according to manufacturer’s instructions (Becton Dickinson). Results were analyzed using the BD CSampler software (Becton Dickinson). Data acquisition was performed with the BD-AccuriC6 software, and the cytokine concentrations were determined using the FCAP software v.3.0. According Becton Dickinson the limits of detection for these cytokines are: 7.2 pg/mL for IL-1β, 3.7 pg/mL for TNF-α, 2.5 pg/mL for IL-6, 3.6 pg/mL for IL-8, and 3.3 pg/mL for IL-10. The statistical analysis of the samples that showed values lower than the minimum detected concentration (indicating low production) was performed considering the intermediate point between zero and the lowest value.
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6

Platelet Lysate vs Fetal Bovine Serum Cell Culture

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PSC (1.5 × 105 cells) were initially plated at day 0 of the protocol, on DMEM supplemented with either 10% PL or 10% FBS. Cells were grown as described in the protocol. Every time the cells were passed, a 100 μl aliquot was run through a BD Accuri cytometer and the cell number concentration was determined.
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7

Apoptosis Quantification via Flow Cytometry

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Apoptosis was evaluated using both the FITC Annexin V/Dead Cell Apoptosis Kit as per the manufacturer’s instructions (Life Technologies) and sub-G1/G0 population quantification. For the latter, cells were fixed with cold ethanol 70% for 15 min, wash twice with cold PBS, and RNase (100 μg/ml) and propidium iodide (PI, 40 μg/ml, Calbiochem) were added to the samples 10 min prior analysis. Cell death was determined by PI staining (50 μg/ml). Mean survival (PI exclusion) was calculated from 3 independent experiments. Statistical analyses were performed using two-way Student’s test. All flow cytometry analyses were performed on Accuri cytometer (BD Biosciences, CYBIO facility, Institut Cochin) and processed using CFlow plus software (BD Biosciences).
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8

Single-Cell Isolation from Mouse LFRT and UFRT

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Lymph node and spleen tissues were processed into single-cell suspensions. Vagina was separated from urethra and cervix. The LFRT consisted of vaginal tissue and the transformation zone. LFRT or UFRT tissues from individual mice were digested in 1 mg/ml collagenase type IV (Worthington) and 75 μg/ml DNase I (Roche) in RPMI medium. Single-cell suspensions were obtained from the digested tissues using GentleMACS Dissociator (Miltenyi Biotec) according to the manufacturer’s protocol. Cell counts were obtained using an Accuri cytometer (BD), and cell numbers were normalized before antibody staining.
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9

Enteroid Viability Analysis by SYTOX Staining

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Enteroids embedded in BME or in suspension culture with growth media for 1 day were harvested and dissociated with TrypLE Express for 30 minutes in a 37°C water bath. Enteroid cells were pelleted and re-suspended in 10 nM SYTOX Green Nucleic Acid Stain (Invitrogen) in PBS for 10 minutes on ice. Cells were analyzed on an Accuri Cytometer (BD Biosciences) to determine the frequency of SYTOX Green positive cells (dead cells) and analyzed using FlowJo software (FlowJo).
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10

Chemokine-Induced T Cell Migration

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Following 4d differentiation, transduced CD4+ T cells were sorted and re-stimulated with plate bound α-CD3 in 0.5% FBS RPMI for 24hrs. The cells were then plated 0.5% FBS RPMI at 50K/well in a transwell (Abcam) containing 25ng/ml CCL20, CCL17, CCL1, or CCL19 (R&D) in the bottom chamber for 48hrs. The cells migrating into the bottom of the transwell plate were counted by an Accuri cytometer (BD Biosciences) in a blinded fashion by multiple individuals.
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