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32 protocols using bx53 biological microscope

1

Histopathological Analysis of Liver Tissue

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Histopathological analysis was performed by incising standardized specimen from specified portions of liver. Briefly, liver tissues were fixed in 10% formalin for 4 hours, and dehydrated in a graded series of ethanol and embedded in paraffin wax. 4-μm-thick sections were cut and stained with hematoxylin-eosin (H&E) staining and analyzed under Olympus-BX53 biological microscope. To evaluate fat deposition, fresh liver samples were embedded using tissue OCT-freeze medium and sliced into 8–10 μm-thick sections using a cryostat microtome (LEICA CM1850). The frozen sections were then stained with Oil red O for 15 minutes before being analyzed under an Olympus-BX53 biological microscope.
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2

Histopathological Analysis of Liver Specimens

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Histopathological research was conducted on standardized specimens from specified portions of liver. Briefly, liver tissues were fixed in 4% paraformaldehyde for 4 hours and dehydrated in a series of ethanol and embedded in paraffin wax. Sections (4-mm-thick) were stained with hematoxylin-eosin (HE) staing before being analyzed under an Olympus biological microscope (BX53, Tokyo, Japan). The NAFLD activity score (NAS) of each group was calculated as previously described [28 (link)]. Oil Red O-stained lipid droplets of the fresh liver samples were analyzed to quantify lipid content by cell imaging under an Olympus-BX53 biological microscope. Areas of stained droplets were determined using Image J software and normalized to the areas of rat hepatocytes. Sirius red and CD68 (1:800, ab31630, abcam, Cambridge, UK) were used for histological analysis under a light microscope Olympus-BX53.
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3

Lipid Accumulation Assay in HepG2 Cells

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HepG2 cells were cultured for 24 hours and induced with FFA (OA/PA) and/or CG mono-compounds (CG-3, CG-4, CG-10, CG-14). The concentration for positive drug was 20 μM and the concentrations for mono-compounds were at 5, 10 and 20 μM. TG was measured by commercially available kits (Nanjing Jiancheng Bioengineering Institute, Nanjing, China), and proteins were normalized in each group after BCA. Nile red is a selective fluorescent stain for intracellular lipid droplets. Cells, fixed with 4% buffered paraformaldehyde for 15 min, were washed with1 mL PBS and then stained with Nile red (Sigma-Aldrich); Stock solution (0.5 mg/mL in DMSO) was diluted 1:5000 in PBS; 500 μL of this diluted Nile red solution was added into each well (six well plate) and protected from light at room temperature for 5 min and then washed with 1 mL PBS. Pictures were taken with the Olympus-BX53 biological microscope. For the quantitative analysis, HepG2 cells treated with different group of drugs were harvested, and incubated with Nile red (1 μg/ml) in dark for 5 min at room temperature. The fluorescence intensity of each sample was measured immediately by flow cytometry at an excitation wavelength of 488 nm and emission wavelength of 550 nm.
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4

Fluorescent In Situ Hybridization for circRNA and miRNA

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Ribo™ Fluorescent In Situ Hybridization Kit (Ribo, China) was used in FISH assay. Specific probes for the hsa_circ_0005273 were designed and synthesized by RiboBio (Guangzhou, China) and specific probes for the miR-200a-3p were designed and synthesized by IBSBio (Shanghai, China). 4′,6-Diamidino-2-Phenylindole (DAPI) was used to stain cell nuclei. Fluorescence microscope (Olympus BX53 Biological Microscope) was used to capture the images of cells.
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5

Morphological Analysis of Eumeta variegata

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Eumeta variegata bagworm larvae of fifth to final instars were collected in Tsukuba City, Ibaraki, Japan, during August to October in 2015 and 2019. Several body parts of final instar E. variegata bagworm larvae, such as the thoracic legs, prolegs and spinneret, were observed using an Olympus BX53 biological microscope equipped with a DP74 CMOS camera system (Olympus Co., Japan).
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6

Immunohistochemical Analysis of Liver TNF-α

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Glass slides with slices of liver tissue were placed in a drier maintained at 60 °C, dried for 1 h, and deparaffinized using xylene. The tissues were rehydrated and incubated with 0.03% peroxidase for 15 min to block endogenous peroxidase activity. Antigen retrieval was performed by incubating the tissue sections with Tris–EDTA buffer (pH 9.0) at 121 °C for 15 min using a pressure cooker. To prevent non-specific reactions, 4% BSA and dextran was added for 30 min. Subsequently, the sections were incubated with the anti-TNF-α (Abcam) primary antibody for l h and then incubated with the anti-rat IgG H&L (Abcam) secondary antibody for 30 min at room temperature under gentle agitation. Samples were subsequently visualized under a BX53 biological microscope (Olympus, Tokyo, Japan), and representative images were captured for analysis.
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7

Analyzing Mitochondrial Protein Expression

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After 120 minutes of reperfusion, rat myocardial tissue was fixed with neutral formaldehyde (Solarbio, Beijing, China). Sections were baked and then embedded in paraffin (Sinopharm, Shanghai, China). The primary antibody translocase of outer mitochondrial membrane 20 (TOMM20) (Abcam, Cambridge, UK) was added. After the sections were rinsed with phosphate-buffered saline/Tween (PBST), the diluted fluorescent secondary antibody fluorescent CY3-conjugated goat anti-mouse IgG (Boster, Wuhan, China) was added dropwise to stain cell nuclei. The water stains were wiped dry, and the sections were mounted and then observed under a microscope (Olympus BX53 biological microscope) (×400).
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8

Fiber Characterization and Compositional Analysis

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1.0 mL fiber suspension with a mass fraction of 0.05% was placed on the glass slides. After drying, the fibers were dyed with 2–3 drops of Herzberg stain30 . The length and diameter of fibers were observed and measured by the BX53 biological microscope (Olympus Corporation, Japan). Each group of samples were prepared with 3 pieces of glass slides containing fibers. The total number of fibers observed on each glass slide was more than two hundred. The thickness of the fibrous cell wall was measured by the cross section of the fiber in the SEM. The number of representative fibers measured for each set of samples was twenty. The general value in various sizes of fibers covered 70% of the fibers in quantity31 .
The holocellulose, alpha-cellulose, and Klason lignin content were determined according to the ASTM standards D1104–56(1971), D1103–60 (1971), and D1106–96 (1996), respectively. The pentosan content was determined according to TAPPI T 223 CM-2010. The yields were obtained based on the ratio of the oven dry weights of the STP or UTP to the original weight of the HYP.
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9

Histological Evaluation of Lung Injury

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The lung tissues were soaked in 10% neutral buffered formalin for 24 h and then the samples were dehydrated with graded alcohol dilutions. Subsequently, the tissues were embedded in a wax block and sliced into paraffin sections, which were stained with hematoxylin–eosin (H&E), and pathological changes of the lung tissues were observed using a light microscope (Olympus BX53 biological microscope). The lung injury was assessed independently by two blinded pathologists according to following items: neutrophils infiltration to the airspace or alveolar space, hyaline membranes formation, alveolar septal thickening, pulmonary hemorrhage [22 (link)]. The scores were as follows: no injury with a score of 0; mild to moderate injury with a score of 0.1–2.5; and severe injury with a score of 2.6–4.0 [23 (link)].
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10

CircSEMA4B FISH Assay Protocol

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Ribo™ Fluorescent in Situ Hybridization Kit (Ribo, China) was used in FISH assay. Specific probes for the circSEMA4B were designed and synthesized by RiboBio (Guangzhou, China) and specific probes for the miR-330-3p were designed and synthesized by IBSBio (Shanghai, China). 4’,6-Diamidino-2-Phenylindole (DAPI) was used to stain cell nuclei. Fluorescence microscope (Olympus BX53 Biological Microscope) was used to capture the images of cells.
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