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10 protocols using mk 2206

1

Evaluation of Molecular Inhibitors

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The inhibitors were purchased from Sellekchem (JQ1, IBETs, Lapatinib, MK-2206, Dequalinium Chloride, Trametinib, Doramapimod), ChemiEtek (S63845) and MedChemExpress (JQ1 and A939572). Specific antibodies against MCL1, BCL2, BCL-XL, BRD4, cleaved PARP, p-AKT(T308), p-AKT (S473), p-PKC, p-P38, p-MEK1/2, p-GSK3, p-HER2 (T1248)/p-EGFR (Tyr1173), V5-Tag (D3H8Q), EGFR, GSK3 and AKT were purchased from Cell Signaling Technology, MA. Antibody against β-actin is from Sigma-Aldrich. Anti-hERBB2/Her2 AF488 antibody was purchased from R&D systems Biotechne.
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2

Lung Cancer Cell Lines Validation

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A panel of human lung cancer cell lines, PC14, H661, A549, H827, PC9, H1915, H2170, H460 and H1299, was used for in vitro validation and functional analysis. These cells were purchased from the ATCC (Manassas, VA) and cultured in RPMI medium (HyClone, Logan, UT) Aldrich, St. Louis, MO) in an atmosphere at 37°C in a humidified 5% CO2 incubator. The cells with gene transfection were treated with or without 1μM MK2206 (AKT inhibitor) (Chemietek, Indianapolis, IN) for 24h [44 (link)] / 50nM AZD8330 (ERK inhibitor) (Selleckchem,Texas, USA) for 18h [45 (link)], which were dissolved in dimethylsulfoxide (10 mM stock solution) and stored at 20°C. The drug was used at the indicated final concentrations in culture medium.
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Molecular Biology Reagents Procurement

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Chemical and molecular biology reagents were purchased from Fisher Scientific (Pittsburgh, PA) unless otherwise noted. BMS-754807 was purchased from Active Biochemicals Co. Batimastat and ZnCl2 were purchased from Sigma (St. Louis, MO, United States), MK2206 from ChemieTek (Indianapolis, IN), wortamannin and Rapamycin from Calbiochem (Gibbstown, NJ). The Phospho-Akt antibody was purchased from Cell Signaling Technology (Danvers, MA, United States) and restriction enzymes were purchased from New England BioLabs (Ipswich, MA, United States). Primers, TRIzol, M-MLV reverse transcriptase were purchased from Life Technologies (Carlsbad, CA, United States). Anti-Digoxigenin-AP antibodies was purchased from Roche (Basel, Switzerland). The pT3.Cas 9-UTRglobin vector was a gift from Dr. Yonghua Sun, Institute of Hydrobiology, Chinese Academy of Sciences.
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4

NCI-60 Cell Line Anticancer Drug Screen

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The complete NCI-60 panel was obtained from National Cancer Institute (NCI) Anticancer Drug Screen (Bethesda, MD, USA). Pancreatic cell lines were obtained from ATCC (Manassas, VA, USA). All cells were cultivated in RPMI including 2 mM glutamine and 11.11 mM glucose supplemented by 10% FBS and penicillin/streptomycin (GIBCO, Grand Island, NY, USA).
Romidepsin (depsipeptide, NSC 630176) was provided by the Cancer Therapy Evaluation Program, NCI. Tariquidar was provided by the NCI Anticancer Drug Screen. PD-0325901 (MEK inhibitor), MK-2206 (AKT inhibitor) were purchased from ChemieTek (Indianapolis, IN, USA). Glutaminase inhibitor 968 compound was obtained from Millipore (Burlington, MA, USA); oligomycinA, NAC, glutathione, dimethyl-α-ketoglutarate, dimethyl-glutamate, sodium citrate, and sodium acetate were obtained from Sigma-Aldrich (St. Louis, MO, USA); DPI, ML171, and etomoxir was obtained from Selleckchem (Houston, TX). MitoQ was provided by Dan L. Sackett (NIH, NICHD).
Unless otherwise specified, t-tests were performed to evaluate significance of results, and asterisks were added to graphs when the p-value was lower than 0.05.
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5

Evaluation of Molecular Inhibitors

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The inhibitors were purchased from Sellekchem (JQ1, IBETs, Lapatinib, MK-2206, Dequalinium Chloride, Trametinib, Doramapimod), ChemiEtek (S63845) and MedChemExpress (JQ1 and A939572). Specific antibodies against MCL1, BCL2, BCL-XL, BRD4, cleaved PARP, p-AKT(T308), p-AKT (S473), p-PKC, p-P38, p-MEK1/2, p-GSK3, p-HER2 (T1248)/p-EGFR (Tyr1173), V5-Tag (D3H8Q), EGFR, GSK3 and AKT were purchased from Cell Signaling Technology, MA. Antibody against β-actin is from Sigma-Aldrich. Anti-hERBB2/Her2 AF488 antibody was purchased from R&D systems Biotechne.
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6

Comprehensive Reagent Sourcing for Molecular Biology

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Chemical and molecular biology reagents were purchased from Fisher Scientific (Pittsburgh, PA, USA) unless stated otherwise. BMS-754807 was purchased from JiHe Pharmaceutica (Beijing, China) and NBI-31772 from Tocris Bioscience (Ellisville, MO, USA). Liberase TM, Alizarin Red S, ZnCl2, and batimastat were purchased from Sigma (St. Louis, MO, USA). MK2206 was purchased from ChemieTek (Indianapolis, IN). Rapamycin was purchased from Calbiochem (Gibbstown, NJ). Antibodies (phospho-Akt, phospho-S6, and phospho-Erk) were purchased from Cell Signaling Technology (Danvers, MA, USA). Restriction enzymes were purchased from New England BioLabs (Ipswich, MA, USA). Primers, cell culture media, antibiotics, TRIzol, M-MLV reverse transcriptase, Alexa Fluor 488 Tyramide SuperBoost Kit, and Tetramethylrhodamine (TMRM) were purchased from Life Technologies (Carlsbad, CA, USA). Anti-Digoxigenin-POD and Anti-Digoxigenin-AP antibodies were purchased from Roche (Basel, Switzerland).
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7

Culturing Human Keratinocytes and Murine BCC Cells

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Adult normal human epidermal keratinocytes (Lonza, Switzerland) and murine ASZ001 BCC cells (a gift from Dr. E. Epstein Jr.) (21 (link)) were cultured in Medium 154CF, supplemented with Human Keratinocyte Growth Supplement (Thermo Fisher, Waltham, MA). ASZ001 cells display cellular morphology similar to that of human BCCs, express BCC markers, and are sensitive to SMO inhibition (22 (link), 23 (link)). The authors did not authenticate the cell lines. pUSEamp-myrAkt1 was obtained from Millipore (Billerica, MA). Perifosine was purchased from Selleckchem (Houston, TX), edelfosine from Sigma-Aldrich (St. Louis, MO), and MK-2206 from ChemieTek (Indianapolis, IN).
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8

Inhibitor-based Pathway Analysis

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All chemicals and reagents were purchased from Fisher Scientific (Pittsburgh, PA) unless otherwise specified. NVP-AEW541 was obtained from Novartis (Basel, Switzerland) and BMS-754807 was purchased from JiHe Pharmaceutica (Beijing, China). Wortmannin and LY294002 were purchased from Cell Signaling Technology (Danvers, MA). AZD8055 and Torin1 were purchased from Selleck Chemicals (Houston, TX). Rapamycin and Akti-1/2 were purchased from Calbiochem (Gibbstown, NJ). MK2206 was purchased from ChemieTek (Indianapolis, IN). All inhibitors were dissolved in DMSO and further diluted in water. Restriction enzymes were purchased from New England Bio Labs (Beverly, MA). The TRIzol reagent, M-MLV reverse transcriptase, and RNaseOUT™ Recombinant Ribonuclease Inhibitor were purchased from Invitrogen (Waltham, MA). The anti-GFP antibody was purchased from Torrey Pines Biolabs (Secaucus, NJ). The Phospho-Akt (Ser 473) and Phospho-S6 antibody were purchased from Cell Signaling Technology (Beverly, MA).
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9

Inhibitors of Cell Signaling Pathways

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Romidepsin was obtained from the Developmental Therapeutics Program of the National Cancer Institute (Bethesda MD). The MEK inhibitor PD-0325901, the AKT inhibitor MK-2206, the ERK inhibitor Vx-11e and the PI3K inhibitor GDC-0941 were purchased from ChemieTek (Indianapolis, IN). Q-VD-OPh was from R&D Systems (Minneapolis, MN). The dual pathway inhibitor, D-87503, was synthesized in-house by the Chemical Biology Laboratory, Center for Cancer Research (Frederick, MD).
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10

EphA2 and Akt Signaling Pathway Inhibitors

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The pharmacological MEK inhibitors U0126 and PD98059, and phosphatidylinositol 3-kinase (PI3K) inhibitor LY294002 were purchased from Merck Millipore. Akt inhibitor MK-2206 was from ChemieTek, and RSK inhibitor BI-D1870 was from Santa Cruz Biotechnology. We used the following antibodies in this study: a rabbit polyclonal antibody against EphA2 (C-20) (Santa Cruz Biotechnology); a mouse monoclonal antibody against a-tubulin (Sigma); rabbit monoclonal antibodies against S897 phospho-EphA2 (D9A1) and T308 phospho-Akt (C31E5E), rabbit polyclonal antibodies against Akt, ERK, and T202/Y204 phospho-ERK, a mouse monoclonal antibody against EphA2 (8B6) (Cell Signaling Technology); a mouse monoclonal antibody against HA (3F10) (Millipore); secondary antibodies conjugated to horseradish peroxidase (DAKO); Alexa Fluor 488-conjugated anti-GFP and Alexa Fluor 594-conjugated goat anti-mouse IgG (Thermo Fisher Scientific).
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