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11 protocols using ap20187

1

iCasp9-NK Cell Apoptosis Analysis

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The iCasp9-NK cells along with unmodified NK cells were incubated for 24 h in a medium, with the addition of: PBS, DMSO, and 100 nM of chemical inductor of dimerization (CID) (AP20187 (MedChemExpress, Monmouth Junction, NJ, USA). DMSO was taken at a concentration corresponding to its content in a sample with 100 nM CID. The level of apoptosis and cell viability were measured by flow cytometry with the use of AnnexinV-AF647 (Invitrogen, San Jose, CA, USA) and Sytox-VioBlue (Invitrogen, San Jose, CA, USA).
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2

Combination Therapy for Cancer Treatment

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Ganciclovir (Genentech, San Francisco, CA; 25 mg/kg), dissolved in water and phosphate‐buffered saline [PBS]) or PBS alone, was administered i.p. for five consecutive days, with 10–14 days between the last dose of one treatment round and the first day of the next treatment round. AP20187 (MedchemExpress, Monmouth Junction, NJ; 10mg/kg, dissolved in ethanol for stock solution, then diluted in PEG‐400 and 2% Tween for dosing solution) or PEG‐400/Tween 2% in water (vehicle) was administered by i.p. injection for three consecutive days, with 12 days between treatments. Dasatinib (LC Laboratories, Woburn, MA; 5 mg/kg) and quercetin (Sigma Aldrich, St. Louis, MO; 50 mg/kg) or vehicle (60% Phosal, 10% ethanol, and 30% PEG‐400) were administered for five consecutive days monthly via oral gavage in cohort 1, or for three consecutive days, with 14 days between the last dose of one treatment round and the first day of the next treatment round in cohort 2. For CyTOF experiments, a single course of AP20187 (3 days) or D + Q (5 days) was given 3 days prior to sacrifice. Navitoclax (Active Biochem, Kowloon, Hong Kong; 50 mg/kg) or vehicle (60% Phosal, 10% ethanol, and 30% PEG‐400) was administered via oral gavage for five consecutive days monthly. Body composition was measured by EchoMRI (Echo Medical Systems, Houston, TX).
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3

In vitro and in vivo cancer cell cultures

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Unless otherwise specified, reagents were obtained from Millipore Sigma. Palbociclib (#HY-50767A), and AP20187 (#HY-13992) were purchased from MedChem Express. Human mammary adenocarcinoma MCF7 cells (RRID:CVCL_0031) and triple negative breast carcinoma (TNBC) MDA-MB-231 (RRID: CVCL_0062) cells, as well as mouse mammary adenocarcinoma TS/A cells (RRID:CVCL_VQ63) were kindly provided by Dr. Sandra Demaria (Weill Cornell Medicine). All cell lines were routinely maintained at 37 °C under 5% CO2, in Dulbecco's Modified Eagle's Medium (DMEM) supplemented with 10% fetal bovine serum (FBS), 5 mM L-glutamine, 5 mM HEPES buffer, 50 μM β-mercaptoethanol 100 U mL−1 penicillin sodium, 100 µg mL−1 streptomycin sulfate and 50 µg mL−1 gentamycin. Cells were authenticated by STR profiling (a service provided by IDEXX Bioresearch) and periodically checked for Mycoplasma spp. contamination by the PCR-based LookOut® Mycoplasma PCR Detection Kit. All cells were employed for experiments 2–10 passages after thawing. All irradiation procedures were performed on a Small Animal Radiation Research Platform (SARRP, from Xstrahl).
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4

Fibrosis Induction and Treatment in Engineered Mice

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Mammary gland fibrosis was induced in female six-week-old NeuT/ATTAC mice by i.p. injection of 0.4 mg/kg AP20187 (MedChemExpress) dissolved in a vehicle (4% ethanol, 10% PEG-400 and 1.75% Tween-20 in water) three times per week, and are hereafter referred to as ‘NeuT/ATTAC+AP’ mice. AP20187 is a dimer analog of FK506 and serves as a selective FKBPv-caspase 8 dimerizer resulting in partial ablation of mammary fat and its replacement by fibrotic tissue [31 (link), 32 (link)]. At eight weeks of age, NeuT/ATTAC+AP mice were administered ad libitum a diet (LabDiet 5053) supplemented with 0.05% (w/w) DMHCA (WuXi App Tec, China), which is equivalent to a dose of ~100 mg/kg. No weight loss or overt toxicity resulted from AP21087 or DMHCA treatment. The treatments are summarized in S1 Fig in S1 File.
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5

Resuspension and Application of AP20187 Compound

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AP20187 (MedChemExpress, HY-13992) was resuspended in 75% EtOH at 62.5 mg/ml and stored at −20°C. For in vitro experiments, cells were treated with 100 nM AP20187 for 48–72 h. In vivo, the compound was dissolved in 2% Tween-20 (Sigma-Aldrich, P7949) and 10% PEG-300 (Sigma-Aldrich #202371) and mice were i.p. injected with 2.5 mg/kg AP20187.
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6

Transfection and AP20187 Induction

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HEK293T/17 cells were transfected using Lipofectamine 3000 (L3000008, Thermo Fisher, Waltham, MA, USA) according to the user manual. All cells received the same amount of DNA with backbone pcDNA3 making up differences in mass. AP20187 (HY-13992, MedChemExpress, Monmouth Junction, NJ, USA) was added to cells by replacing supernatant with OptiMEM (31985-070, Thermo Fisher, Waltham, MA, USA) with 500 nM AP20187 or DMSO for western blot endpoints, or was added to the supernatant for a final concentration of 500 nM in complete DMEM for LDH endpoints. Plasmids used are listed in Table 4.
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7

Synchronous Infection Monitoring in HeLa Cells

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HeLa cells were transfected with pLVX-hNUP62Fv2GFP and selected in medium containing 2 μg/ml puromycin. Cells were growth arrested with 1.5 μM aphidicolin 24 h prior to infection. Cells were synchronously infected with equal amounts of p24 in the presence or absence of CsA. At each timepoint, media containing 1.5 μM AP20187, a homodimerizing drug (MedChemExpress), was added to the cells. Media was replaced at 24 h and cells were lysed 24 h later for measurement of luciferase. Infectivity of each time point was normalized to cells infected in the absence of AP20187.
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8

HEK293T Transfection and AP20187 Treatment

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HEK293T/17 cells were transfected using Lipofectamine 3000 (L3000008, ThermoFisher, Waltham, MA, USA) according to the user manual. All cells received the same amount of DNA with backbone pcDNA3 making up differences in mass. AP20187 (HY-13992, MedChemExpress, Monmouth Junction, NJ, USA) was added to cells by replacing supernatant with OptiMEM (31985–070, ThermoFisher, Waltham, MA, USA) with 500 nM AP20187 or DMSO for Western blot endpoints, or was added to the supernatant for a final concentration of 500 nM in complete DMEM for LDH endpoints.
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9

Senescent Cell Depletion in Mice

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Experimental procedures were approved by the Institutional Animal Care and Use Committee at Mayo Clinic (protocol A26415). INK‐ATTAC transgenic mice were generated and genotyped as previously described (Baker et al,2011) based on experimental strategies devised by J.L.K., T.T., J. van Deursen and D. Baker at Mayo Clinic. Briefly, INK‐ATTAC mice were produced and phenotyped at the Mayo Clinic. Controls for the INK‐ATTAC experiments were INK‐ATTAC‐null C57BL/6 background mice raised in parallel. Mice were housed 2–5 mice per cage, at 22 ± 0.5C on a 12–12 h day–night cycle and provided with food and water ad libitum. Cages and bedding (autoclaved Enrich‐o’Cobs (The Andersons Incorporated)) were changed once per week. In all the experiments, littermates of the same sex were randomly assigned to experimental groups. INK‐ATTAC mice were injected intraperitoneally (i.p.) with AP20187 (10 mg/kg) (MCE MedchemExpress; Cat: # HY‐13992/CS1953) or vehicle (4% ethanol, 10% PEG‐400, and 2% Tween‐20 in distilled water) for 3 days every 2 weeks for a total of 8–10 weeks.
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10

Comprehensive Apoptosis and Inflammation Assay

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Val-boroPro (MedChemExpress, HY-13233A); AP20187 (MedChemExpress, HY-13992); Poly dA:dT (Sigma-Aldrich, P0883); Lipopolysaccharides from Escherichia (E.) coli K-235 (Sigma-Aldrich, L2018); z-VAD-fmk (R&D Systems, FMK001); recombinant mouse M-CSF (R&D Systems, 416-ML); Bacto-thioglycolate medium without dextrose (Difco, 0363-17-2); SUPERFASLIGAND Protein (Enzo Life Sciences, ALX-522-020-C005); Recombinant Murine TNF-α (PeproTech, 315-01A); nigericin (Cayman CHEMICAL, 11437); and Puromycin aminonucleoside (Focus Biomolecules, 10-2101) were purchased. YO-PRO-1 Iodide (Y3603), Blasticidin S (R21001), and Geneticin (11811023) were purchased from Thermo Fisher Scientific. CA-074 Me (4323-v), E-64-d (4321-v), and Pepstatin A (4397-v) were purchased from Peptide Institute (Osaka, Japan).
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