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13 protocols using pre 084

1

Sigma-1 Receptor Antagonist Evaluation

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The newly synthesised σ1R antagonist, S1RA: 4-[2-[[5-methyl-1-(2-naphthalenyl)-1H-pyrazol-3-yl]oxy]ethyl] morpholine), was obtained from Laboratorios Esteve (Barcelona, Spain). BD1047 (#0956), BD1063 (#0883) and PRE084 (#0589) were obtained from Tocris Bioscience (Bristol, UK). Compounds were dissolved in ethanol/Cremophor EL/physiological saline (1:1:18). To facilitate selective and straightforward access to their targets, the compounds were each injected into the lateral ventricles of mice at 4 μL as previously described or via an injection in the tail vein. Groups of 8 to 10 mice received doses of the selected compounds.
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2

Spinal Cord Organotypic Cultures for Excitotoxicity

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Spinal cord organotypic cultures (SCOCs) were prepared from lumbar sections of Sprague–Dawley pups (8–9 days-old) as previously described (Mòdol-Caballero et al., 2017 (link)). After harvesting, the spinal cord was cut in 350 μm thick transverse sections, that were transferred on Millicell-CM nets (0.4 μm, PICM03050, Millipore) and then into a six-well plate with the incubation medium [50% (v/v) minimal essential medium (MEM, M5775, Sigma), 2 mM glutamine, 25 mM HEPES, 25% (v/v) Hank’s Balanced Salt Solution (HBSS−/−, 14,175, Gibco) supplemented with 25.6 mg/ml glucose and 25% (v/v) heat-inactivated horse serum (26,050–088, Gibco), pH = 7.2). After 7 days in vitro (DIV), chronic excitotoxicity was induced by adding DL-threo-β-hydroxyaspartic acid (THA; 100 μM), a selective inhibitor of glutamate transport (Rothstein et al., 1993 (link)). The Sig-1R ligands were simultaneously co-added in the culture medium and renewed at each medium change twice per week. Sig-1R ligands PRE-084, BD1063 and SA4503 (Tocris) were tested at three different concentrations (30, 3 and 0.3 μM). Riluzole (5 μM) was also assayed as positive control. Slices were maintained for 28 DIV and then fixed with 4% paraformaldehyde in phosphate-buffered saline (PBS). The in vitro experiments have been performed in three independent cultures and resulting in 12 slices for each experimental condition.
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3

Adipocyte Differentiation Protocol

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We followed a standard protocol23 (link). MEFs were first cultured for 2 days in growth medium supplemented with 10 μg/ml insulin (Sigma Aldrich, I6634), 1 μM dexamethasone (Sigma Aldrich, D4902), 0.25 mM isobuthylmethylxanthine (Sigma Aldrich, I5879), and 10 μM troglitazone (Sigma Aldrich, T2573). At the end of this incubation (denoted as day 0), the culture was continued in the differentiation medium supplemented with 10 μg/ml insulin and 10 μM troglitazone for another 8 days, with the medium changed every 2 days. For pharmacological treatment, the Sig1R agonist PRE084 (cat#0589, Tocris) or antagonist BD1047 (cat#0956, Tocris) were added upon changing the culture to the differentiation medium.
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4

Evaluating ANAVEX2-73 and PRE-084 in HeLa and HEK293A Cells

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HeLa and HEK293A cells were cultured in DMEM (Invitrogen, Carlsbad, CA, USA, 41965062) supplemented with active FBS (Life Technologies GmbH, Carlsbad, CA, USA, 10270106), 1× ABAM (Invitrogen, 15240-062) and 1 mM sodium pyruvate (Invitrogen, 1136-088). After medium change, they were treated for 2 h with 10, 1, and 0.1 µM ANAVEX2-73 and PRE-084 (Tocris, Bristol, UK, 0589), respectively; ANAVEX2-73 was provided by ANAVEX Life Sciences Corp, New York, NY, USA. Afterwards Bafilomycin A1 (BafiA1) (Toronto Research Chemicals, North York, ON, Canada, B110000) was added for a further 2 h and the cells were eventually harvested. Western blot analyses were performed as described previously [40 (link),41 (link)]. Briefly, cells were subjected to SDS–PAGE using precast NuPAGE 4%–12% Bis-Tris gels (Invitrogen, NPO322). Proteins were detected by chemiluminescence using the Amersham Imager 600 (GE).
Confocal fluorescence microscopical analyses of HEK293A cells stably expressing GFP-LC3B (kind gift of Dr. Sharon Tooze) were performed with the laser scanning microscope LSM 710 (Zeiss, Oberkochen, Germany).
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5

HUVEC Barrier Function and Metabolism

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Example 3

HUVEC and media were obtained from LifeLine cell technology, PRE-084 from Tocris Biotechne, and CCCP from Abcam. TER was determined with an Electrical Cell-Substrate Impedance Sensor (ECIS; Applied Biophysics). For transfection, 200 nM σ1 siRNA (SEQ ID NO: 2: GGCUUGAGCUCACCACCUA) or control non-targeting RNA (SEQ ID NO: 3: UGGUUUACAUGUUUUCCUA) purchased from Dharmacon was introduced with the Nucleofector II device (Lonza). Cell culture procedures, TER recordings, and protein isolation and transfection protocols have been previously described. Western blotting was done using WES (Protein Simple). Rabbit anti σ1 was purchased from Novus Biologicals NBP1-82479 and mouse anti (β-actin was from cell signaling #3700. Both primaries were used at 1:50 dilution. Seahorse xfp analyzer was used for glycolytic rate and ATP rate with assay kits (Agilent) according to manufacturer's instructions using 40.000 cells/well. Calculation of assay parameters was done using Wave software with its built-in report generators and statistical analysis was done using Prism 7.

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6

Radioligand Binding Assay Protocols

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Compounds were purchased from the following sources: 4-PPBP, BD1063, (+)-igmesine, PRE-084 from Tocris Biosciences (Minneapolis, MN); butamirate, carbetapentane, and NE-100 were from Santa Cruz Biotechnology (Dallas, TX); and donepezil oxeladin, promethazine was from Sigma-Aldrich (St. Louis, MO). Radioligands were purchased from PerkinElmer: ([3H] - (+)-pentazocine ((+)-Pentazocine, [RING-1,3-3H], 33.9 Ci/mmol, NET1056), [3H]-DTG (1,3-Di-o-tolylguanidine, [p-RING-3H]-, 50 Ci/mmol, NET986) (Saint Louis, MO). All compounds were prepared in DMSO at concentrations ranging from 10–100 mM. Stocks were then diluted 1:1000 (v/v) in the final assay solution.
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7

Protein Purification and Modification Protocol

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Streptavidin-agarose-beads, Brefeldin A (BFA), Biotin, sulfo-NHS-LC-Biotin, and thapsigargin were from Sigma. Pridopidine was a kind gift of Michal Geva at Prilenia Ltd. Pre-084 was from Tocris Bioscience. Endo H, HindIII, NotI, BamHI, and EcoRI restriction enzymes were from New England Biolabs (NEB).
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8

Neuroactive Compounds Delivery Protocol

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Pre084 (Tocris, Ellisville, MO, USA), mefloquine (Mef), alitetrinoin (Ali), S-adenosylmethionine (SAM), ephedrine (EPHE), acamprosate calcium (ACA), ribavirin (RIB; Norman), and Ex-527 (Sigma-Aldrich, Saint Louis, MO, USA) were diluted in artificial cerebrospinal fluid (aCSF: 124 mM NaCl, 3 mM KCl, 26 mM NaHCO3, 2 mM CaCl2∙2H2O, 1 mM MgSO4∙7H2O, 1.25 mM KH2PO4, and 10 mM D-glucose) used as a vehicle alone or with 0.01% DMSO in the case of comparative studies with Ex-527. The concentrations prepared in the pumps were 5 × the desired final concentration in animal CSF: 0.015 mM for MEF, 0.15 mM for ALI, 5 mM for ACA, 20 µM for RIB, 36.5 µM for EPHE, 187 µM for SAM, 50 µM for Pre084, and 7 mM for Ex-527. We added spermidine (Sigma-Aldrich) to the drinking water; it was freshly added at 30 mM concentration every 2–3 days for 21 days as described elsewhere41 (link). For oral administration, ACA (Merck, Darmstadt, Germany) and RIB (Normon, Madrid, Spain) were dissolved in water at a final concentration of 2.2 mM and 1 mM, respectively for dose 2 (0.25 × group).
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9

Neuroprotective Effects of α7-nAChR and s-1R Agonists

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Treatments were carried out with the α7-nAChR agonist N-(3R)-1-azabicyclo[2.2.2]oct-3-yl-furo,2,3-c]pyridine-5-carboxamide (PHA) 543613 (ICOA, Orléans, France) and the s-1R agonist 2-(4-morpholinethyl) 1-phenylcyclohexanecarboxylate (PRE)-084 (Tocris Biosciences, Lille, France), both dissolved in sterile water. The administration of drugs started at 4 hours post intra-striatal 6-OHDA injection and was continued daily for 14 days. PHA 543613 was given at a dose of 6 mg/kg per day per os and PRE-084 at 1 mg/kg per day through intra-peritoneal (i.p.) injection. In this study, fourteen 6-OHDA lesioned rats were randomly divided into two experimental groups of seven. The first groups received the dual therapy (PHA/PRE group) and at the same time point the other received vehicle (Control group: 0.3 mL sterile water/300 g body weight per os and 0.3 mL sterile water/300 g body weight intraperitoneally).
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10

Neurochemical Profiling of 6-OHDA Model

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The following chemicals were used: afobazole (5‐ethoxy‐2‐[2‐(morpholino)‐ethylthio]benzimidazole dihydrochloride) (FSBI “Research State Zakusov Institute of Pharmacology”), PRE-084 (Tocris), BD-1047 (Tocris), 6-hydroxydopamine hydrochloride (6-OHDA), ascorbic acid, NaCl, sucrose, paraformaldehyde (PFA), polyclonal antibodies against tyrosine hydroxylase T8700 (Sigma-Aldrich), secondary antibodies conjugated with CF488 fluorochrome SAB4600045 (Sigma-Aldrich), FluoroShield, 4′,6-diamidino-2-phenylindole, Triton X-100, chloral hydrate, 3,4-dihydroxybenzylamine hydrobromide (DHBA), dopamine (DA), 3,4-dihydroxyphenylacetic acid (DOPAC), homovanillic acid (HVA), KH2PO4, H3PO4, HClO4, citric acid, EDTA-Na2, octanesulfonic acid, acetonitrile, and Tissue Tek O.C.T. medium.
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