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4 protocols using mm00447557 m1

1

Gene Expression Analysis by RT-PCR

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The RNAs were then used as templates for reverse transcription polymerase chain reaction (RT-PCR) using the Superscript III reverse transcriptase kit (Invitrogen, USA) following the manufacturer’s instructions. Specific TaqMan probes for tumor necrosis factor-α (TNF-α) (Mm00447557_m1) and Interleukin-6 (IL-6) (Mm00500992_m1) (Applied Biosystems, USA) were used and real-time polymerase chain reaction (rt-PCR) analysis was performed with a 7500 Fast Real-Time PCR system using TaqMan Universal PCR mix at the following thermal cycling protocol: 95° C for 10 min followed by 40 cycles of 95° C for 15 s and 60° C for 1 min. The Actin beta was used as the internal control. Data were analyzed using 7500 Fast System SDS Software 1.3.1. (Applied Biosystems).
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2

Quantitative RT-PCR Analysis of Neuronal Genes

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Based on the microarray analysis, reverse transcription reactions were carried out with the SuperScript III Reverse Transcriptase (RT) kit (Invitrogen, Carlsbad, CA, USA). In accordance with the manufacturer's instructions, 1 μg of total RNA and 1 μl of oligo(dT)12–18 primers were denatured at 65°C for 5 min and subsequently chilled at 4°C. After the addition of SuperScript III RT (200 U), the reaction mix was incubated at 42°C for 60 min, followed by another 10 min at 70°C. All primer sets and TaqMan probes for experimental genes were from Applied Biosystems (Foster City, CA, USA): mouse tyrosine hydroxylase (TH) (Mm00447557_m1), mouse pyruvate carboxylase (PC) (Mm00500992_m1), mouse brain-derived neurotrophic factor (BDNF) (Mm04230607_s1), and mouse GAPDH (Mm99999915_g1). For the quantification of mRNA, TaqMan Real Time-PCR amplification reactions were carried out using an AB 7500 Fast Real-Time PCR system (Applied Biosystems). Amplifications were performed in a final volume of 20 μl, using 10 μl of TaqMan Universal PCR Master Mix UNG (Applied Biosystems), 1 μl of the corresponding primer/probe mix, and 9 μl of template cDNA (final concentration 100 ng/20 μl). Cycling conditions were as follows: 2 min at 50°C, 10 min at 95°C, and 40 cycles at 95°C for 15 s followed by 60°C for 1 min.
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3

Quantifying Adrenergic Receptor 2A mRNA

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Locus coeruleus adra2a mRNA levels were determined from adra2a KD and scramble AAV-injected mice by real time (quantitative, q)-PCR (n=4), using a Taqman® RNA-to-CTTM1-Step kit (Applied Biosystems, Foster City, USA). Briefly, brains were removed and 1-mm tissue punches were collected using 1-mm interval mouse brain matrix (Zivic Instruments, Pittsburgh, PA, USA) and 1-mm core diameter hollow needles. Total RNA was extracted from frozen tissues using TRIzol. qPCR was performed on an ABI StepOne Plus Real Time PCR system (Applied Biosystems, Foster City, USA) using the adra2a primers (Applied Biosystems, Mm00845983_s1, described previously43 . Data were evaluated with SDS 2.1 software, using the Comparative CT method (ΔΔCT) to measure gene expression. Relative expression of the adra2a mRNA was determined by comparing AAV-shRNA mRNA levels in the knockdown group to those in AAV-scramble, mice and normalized to expression of tyrosine hydroxylase (TH) mRNA (TH primers were:Applied Biosystems, Mm00447557_m1).
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4

Quantifying Adrenergic Receptor 2A mRNA

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Locus coeruleus adra2a mRNA levels were determined from adra2a KD and scramble AAV-injected mice by real time (quantitative, q)-PCR (n=4), using a Taqman® RNA-to-CTTM1-Step kit (Applied Biosystems, Foster City, USA). Briefly, brains were removed and 1-mm tissue punches were collected using 1-mm interval mouse brain matrix (Zivic Instruments, Pittsburgh, PA, USA) and 1-mm core diameter hollow needles. Total RNA was extracted from frozen tissues using TRIzol. qPCR was performed on an ABI StepOne Plus Real Time PCR system (Applied Biosystems, Foster City, USA) using the adra2a primers (Applied Biosystems, Mm00845983_s1, described previously43 . Data were evaluated with SDS 2.1 software, using the Comparative CT method (ΔΔCT) to measure gene expression. Relative expression of the adra2a mRNA was determined by comparing AAV-shRNA mRNA levels in the knockdown group to those in AAV-scramble, mice and normalized to expression of tyrosine hydroxylase (TH) mRNA (TH primers were:Applied Biosystems, Mm00447557_m1).
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