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Pegasus 4d tofms

Manufactured by Leco
Sourced in United States

The Pegasus 4D TOFMS is a time-of-flight mass spectrometry (TOFMS) system. It is designed for high-throughput, high-resolution analysis of complex samples. The system utilizes advanced ion optics and data processing technologies to deliver accurate, precise, and sensitive mass measurements.

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11 protocols using pegasus 4d tofms

1

Comprehensive GC/MS Metabolite Profiling

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GC/MS was performed using a Pegasus 4D TOFMS (LecoCorp) equipped with an Agilent 7890 GC and a CTC CombiPAL autosampler. A DB-1 capillary column (30 m × 250 μm (i.d.) × 0.25 μm) with DuraGuard (Agilent Technologies J&W) was used. Helium flow rate was set at 1.5 mL/min and the injection volume was 1 μL with injector split ratio 1:20. For GC, the temperature was 220°C for front inlet and 280°C for transfer line. Column temperature was programed to be at 70°C for 0.2 min, ramped at 15°C/min to 270°C and then at 40°C/min to 310°C, and finally hold at 310°C for 8 min. For MS, the detector voltage was 1,600 V with an acquisition delay of 200 seconds. To facilitate metabolite identification, alkane standard mix (C10-C40; Sigma) and FAME (fatty acid methyl esters) standards (C8-C28; Sigma) were analyzed using the same settings, so that the GC retention time could be converted to two types of retention index (RI), Kovats index and Fiehn index, respectively.
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2

GC-TOFMS Analysis of Derivatized Samples

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The derivatized samples were analyzed using the Agilent 7890 GC system equipped with Pegasus 4D TOFMS (LECO, St. Joseph, MI) with the DB-5MS capillary column (30 m × 250 μm inner diameter, 0.25 μm film thickness coated with 95% dimethylpolysiloxane cross-linked with 5% diphenyl). The chromatography conditions were as follows: initial temperature was maintained at 80°C for 12 s, increased to 180°C at a rate of 10°C/min, to 240°C at a rate of 5°C/min, and further to 290°C at a rate of 20°C/min, and maintained for 11 min. One microliter of sample solution was injected with helium as the carrier gas at a flow rate of 1 mL/min. The temperature of the transfer line and ion source was 245°C and 220°C, respectively. The MS data were acquired at a mass-to-charge ratio (m/z) range of 20 to 600 in a full-scan mode (Li et al., 2018 (link)).
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3

Comprehensive GC-TOFMS Analysis of Pesticides

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The GC-TOFMS instrumentation and quantification were carried out by gas chromatography (Agilent Model 7890B) coupled with Pegasus 4D TOFMS (LECO) with a capillary GC column (RestekRtx-CL pesticides 2) 30 m × 0.25 mm id x 0.25 μm film thickness. The GC operating conditions were: splitless injection, injector temperature 250 °C, helium carrier gas (99.99% purity) at a flow rate of 0.9 mLmin-1 with column head pressure 7.4 psi, oven temperature from 70 °C (2 min hold), then raised to 130 °C at the rate of 25 °C min−1, afterwards raised to 220 °C at 2 °C min−1, and then raised to 280 °C at 10 °C min−1, and eventually 4.6 min hold. The sample (1 μL) was injected in splitless modes. The TOFMS was routinely set in selective ion monitoring (SIM) mode and each compound was quantified based on peak area using one target and one or two qualifier ion. The mass spectrometer parameters were set as follows: electron impact ionization mode with 70 eV electron energy, scan mass range 100–400 at 0.62 s/cycle, ion source temperature 230 °C, MS quad temperature 150 °C, EM voltage 1450 and solvent delay 4 min (Table 1).
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4

Comprehensive Chemical Profiling of Aerosols

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Ten replicates of reconstituted whole aerosol or smoke for each test item, as well as the blank samples and pooled samples, were subjected to GC × GC-TOFMS and LC-HRAM-MS analyses. Both technologies apply a set of diverse analytical methods to ensure the coverage of a wide range of constituent polarities, volatilities, and structural classes. Each aerosol sample was injected once (i.e., no injection replications were performed). Example chromatograms for THS and CC analyzed with all analytical methods are provided in the Electronic Supplementary Material (Fig. S1S7).
GC × GC-TOFMS analyses comprised a total of three analytical methods (GC Polar, GC-Nonpolar, and GC Volatile) covering different ranges of polarity and volatility. The analyses were performed using a Model 7890A or 8890 gas chromatograph (Agilent Technologies, Santa Clara, CA, USA) equipped with an Auto Liquid Injector (Model 7683 or 7693) and a Thermal Modulator coupled to a Pegasus® 4D TOFMS (LECO Corporation, St. Joseph, MI, USA) for nominal mass (Polar and Volatile method) and to a Pegasus® HRT + 4D for high-resolution accurate mass measurements (Nonpolar method).
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5

GC-TOFMS Analysis of Derivatized Samples

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The derivatized samples were analyzed using an Agilent 7890 GC system equipped with a Pegasus 4D TOFMS (LECO, St. Joseph, MI) with a DB-5MS capillary column (30 m × 250 μm inner diameter, 0.25 μm film thickness coated with 95% dimethylpolysiloxane cross-linked with 5% diphenyl under the following conditions: initial temperature was kept at 80 °C for 0.2 min, increased to 180 °C at a rate of 10 °C/min, to 240 °C at a rate of 5 °C/min, and further to 290 °C at a rate of 20 °C/min; the column was then maintained for 11 min. One μL of sample solution was injected with helium as the carrier gas at a flow rate of 1 mL/minute. The temperatures of transfer line, and ion source were 245 °C, and 220 °C, respectively. The MS data were acquired with a mass-to-charge ratio (m/z) range of 20−600 in a full-scan mode.
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6

Comprehensive GC-TOFMS Analysis Protocol

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Gas chromatography with time‐of‐flight mass spectrometry system consisting of Agilent 7890 GC system with weak polar capillary column, DB‐5MS (30 m × 250 μm inner diameter, 0.25 μm film thickness), and a Pegasus 4D TOFMS (LECO Corp.) with an electron impact ionization source was employed. Only one‐dimensional GC was used in this study. In the experiment, the electron impact ionization was tuned at 70 eV and helium was used as carrier gas with an average linear velocity of 1.0 ml/min. The mass spectrometer was operated with a transfer line temperature of 270°C, ion source 220°C, and mass range from 50 to 500 amu at a rate of 20 spectra/s after a solvent delay of 370 s. The injection volume was 1 μl, and the temperature of injection was 280°C. The following oven temperature program: set the initial temperature at 50°C with 1 min, then increased to 310°C at a rate of 10°C/min, and hold 8 min (Lisec, Schauer, Kopka, Willmitzer, & Fernie, 2006).
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7

Metabolite profiling of plant stem samples

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Six biological replicates of each stem sample (0.05 g per sample) of YG689 and ZY821 in the bolting, early flowering, and terminal flowering stages were collected. A total of 36 stem samples were extracted for the GC–TOF–MS analysis, as previously described [64 (link)]. An Agilent 7890 GC system equipped with a Pegasus 4D TOFMS (LECO, St. Joseph, MI, USA) was used for the GC–TOF–MS analysis. Metabolite quantification was performed using a multiple reaction monitoring (MRM) method, as described [65 (link)]. Statistical significance was defined at p < 0.05, with highly significant values at p < 0.01. The VIP (variable importance in the projection) value (threshold > 1) of the first principal component of OPLS-DA model and the p value of the t-test (threshold 0.05) are used to identify the differentially expressed metabolites.
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8

Quantitative Analysis of Adamantane by GC×GC-TOFMS

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Analytical data were measured
by a GC × GC–TOFMS instrument
(United States) composed of an Agilent gas chromatograph GC 7890 A
and Leco Pegasus 4D TOFMS. The primary column was a silica gel column
of Petro (50 m × 0.2 mm × 0.5 μm). The initial temperature
was 35 °C (held for 0.2 min), then heated to 210 °C at 1.5
°C/min (held for 0.2 min). Finally, it arrived at 300 °C
at 2 °C/min (held for 20 min). The secondary column was the chromatographic
column of DB-17HT (3 m × 0.1 mm × 0.1 μm). The temperature
programmed was the same as that of the former but with a 5 °C
offset. The condensate sample (0.5 μL) was injected into the
inlet with a split ratio of 100:1. Furthermore, the injector temperature
was 300 °C. There was 1.5 mL/min helium used as the carrier gas.
The modulation was 45 °C higher than the one-dimensional chromatography,
and its period was 10 s with a 2.5 shot jet timing. The transfer line
temperature was 300 °C, which was 60 °C higher than that
of the ion source. The detector voltage was set at 1600 V. Through
a 9 min solvent delay, 100 scans/s were collected with the mass range
of 40–500 amu.
D16-Adamantane
was used as the standard for quantitative analysis of adamantane in
the GC × GC–TOFMS technique.
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9

GC-TOF-MS Metabolomic Analysis Protocol

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A 300 μL aliquot of the solution used for the NMR analysis was exchanged with water and then dried down by vacuum centrifuge. The dried samples were derivatized for GC-TOF-MS analysis by the two-step derivatization method and analyzed on Leco Pegasus 4D time-of-flight mass spectrometer (TOF-MS) (Fiehn et al., 2008 (link); Kind et al., 2009 (link)). Compounds were separated and characterized on a Restek Rxi-5Sil MS capillary column (30 m × .25 mm × .25 μm with an additional 10m integrated guard column). Acquisition parameters were similar to those established by Fiehn et al (2008) (link). Briefly, 0.5 μl of sample was injected into the GC (at 250 °C injector temperature) in splitless mode with 25 seconds splitless time. An Agilent 6890 gas chromatograph (Santa Clara, CA) was used with a 30 m long, 0.25 mm i.d. Rxi5Sil-MS column with 0.25 μm 5% diphenyl film and an additional 10 m integrated guard column (Restek, Bellefonte PA). Chromatography was performed at a constant flow of 1 ml/min, ramping the oven temperature from 50 °C to 330 °C with 20 °C/min ramp rate. Mass spectrometry was performed using a Leco Pegasus 4D TOF-MS with a 280 °C transfer line temperature, electron ionization at −70 V and an ion source temperature of 250 °C. Mass spectra were acquired from m/z 85–500 at 20 spectra s−1 and 1850 V detector voltage.
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10

Metabolomic Analysis of Synovial Fluid

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100μl individual knee synovial fluid and 50 μl L-2-chlorophenylalanine (internal standard) were mixed in 1.5 ml tube, extracted by 0.35ml methanol, centrifuged at 10000rpm for 10 min at 4°C. Supernatant was completely dried in a vacuum concentrator. The sample was incubated by 80 μl methoxamine hydrochloride diluted with pyridine to 20 mg/ml at 37°C for 2.5 hr, added 100 μl BSTFA containing 1% TMCS(v/v), and hatched in 70°C for 1 hr, then the sample was analyzed by GC/TOF MS.
Derivative metabolite samples were analyzed by an Agilent 7890 gas chromatograph system (Agilent, USA) coupled to a Pegasus 4D TOF MS (LECO, USA). 1μl aliquot of the samples was injected into a DB-5MS capillary column coated with 5% diphenyl cross-linked with 95% dimethylpolysiloxane (30 m × 250 μm diameter, 0.25 μm thickness) (J&W Scientific, USA) for GC separation. Helium was used as the carrier gas and the flow rate through the column was 1 ml/min. The initial temperature was kept at 90°C for 2 min, then raised to 180°C at a rate of 5°C/min, and finally to 285°C at a rate of 15°C/min. The temperature for injection, the transfer line and ion source was 280°C, 270°C, and 220°C respectively. The energy was -70 eV in electron impact mode. The mass spectrometry data was acquired in full-scan mode with the m/z range of 20–600 at a rate of 100 spectra per second after a solvent delay of 492 s.
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