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Rabbit anti lc3 antibody

Manufactured by Cell Signaling Technology
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The Rabbit anti-LC3 antibody is a primary antibody that specifically recognizes the microtubule-associated protein 1A/1B-light chain 3 (LC3) in mammalian cells. LC3 is a widely used marker for the detection of autophagy.

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9 protocols using rabbit anti lc3 antibody

1

Quantification of Autophagy-Related Proteins

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Total EPC protein was extracted and quantified by RIPA Lysis Buffer (Beyotime Biotechnology, China) containing protease inhibitors (Roche) and BCA assay kit (I Thermo, USA) separately. Protein extracts were separated by SDS-PAGE, transferred to PVDF membranes (Roche, Indianapolis, IN, USA). The following antibodies were used: anti-Beclin1 antibody (1 : 1000; ImmunoWay, USA), anti-Atg5 antibody (1 : 1000; ImmunoWay, USA), rabbit anti-LC3 antibody (1 : 1000; Cell Signaling Technology, USA), and anti-ACTB antibody (1 : 1000; Cell Signaling Technology, USA). Proteins were visualized with HRP-conjugated anti-rabbit IgG or anti-mouse IgG (1 : 3000; Cell Signaling Technology, USA), followed by the use of the ECL chemiluminescence system (Thermo). And the level of protein was analyzed by using Image J.
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2

Colocalization Analysis of Autophagy and Lysosome Markers

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After treatments followed by fixation, the cells were incubated with rabbit anti-LC3 antibody (1:100; Cell Signaling Technology, Danvers, MA, USA) and rat anti-Lamp-1 antibody (1:100; Santa Cruz Biotechnology, Dallas, TX, USA) overnight at 4 °C. After slides being washed, Alexa 488-labeled anti-rabbit secondary antibody (1:200; Life Technologies, CA, USA) and Alexa 594-labeled anti-rat secondary antibody (1:200; Life Technologies, CA, USA) were added to the cell slides and incubated for 1 h at room temperature. Slides were then washed, stained with DAPI, and mounted. A Nikon fluorescence microscope in the structured illumination microscopy (SIM) mode was used to obtain images. Image Pro Plus 6.0 software (Media Cybernetics, Bethesda, MD, USA) was employed to analyze colocalization, expressed as the Pearson correlation coefficient [28 (link),39 (link)].
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3

Quantifying Autophagy Markers in Huh-7 Cells

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Huh-7 cells were given low serum media for up to 72 h before cells were lysed and lysates subjected to SDS-PAGE. Proteins were transferred to nitrocellulose membranes and probed for LC3-b (Rabbit anti-LC3 antibody, 1/1000 (Cell Signalling)) with detection of complexes with goat-anti-rabbit-HRP conjugate (Sigma) and chemiluminescence. Protein loading was normalised by re-probing filters for β-actin (anti-rabbit β-actin, 1/10,000, (Sigma)). Membranes were scanned using an Amersham 600 chemiluminescent imager. Densitometry to quantify western blot bands was performed using ImageJ software (http://imagej.nih.gov/ij/), provided in the public domain by the National Institutes of Health, Bethesda, MD, USA). All bands were normalized to β-actin and graphed as LC3I/II.
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4

Quantitative Western Blot Analysis of Autophagy Markers

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The cellular total protein were obtained by a protein extraction kit. Besides, the Bradford protein assay kit (BESTBIO) was used to determine the protein concentration. 30 μg or 50 μg of total cell extracts were analyzed by Western blotting. The proteins were loaded onto 15% SDS-PAGE gels and transferred onto a polyvinylidene difluoride (PVDF) membrane (Millipore, USA). Membranes were incubated with 1 μg/ml Rabbit anti-ATG4a antibody (Polyclonal, ABGENT), 2 μg/ml mouse anti-SQSTM1/p62 antibody (Monoclonal, Abcam), 2 μg/ml rabbit anti-LC3 antibody (Cell Signaling Technology, Inc.), 2.5 μg/ml rabbit anti-GAPDH antibody (Monoclonal, Cell Signaling Technology, Inc.) or 2 μg/ml mouse anti-β-actin antibody (Monoclonal, Cell Signaling Technology, Inc.). After that, the membranes were incubated with 1 μg/ml HRP-conjugated goat anti-rabbit IgG secondary antibody or 1 μg/ml HRP-conjugated goat anti-mouse IgG secondary antibody (Proteintech Group, Inc.). Immunoreactive band analysis was performed by using the enhanced western bright ECL reagent (Advansta, United States). Densitometry analyses of western blots were performed with ImageJ software (version 1.46). Western blots were developed to be linear in the range used for densitometry. All results were expressed as a relative ratio to the β-actin or GAPHD. At least three or four independent western blot experiments were performed.
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5

Immunohistochemical Analysis of LC3 Expression

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Deparaffinized myocardial tissue sections were subjected to 3% hydrogen peroxide for 15 min. For heat-induced epitope retrieval, the sections were placed in a 0.01 mol/L (pH 6.0) citrate buffer and heated at 120 °C for 10 min. Nonspecific binding was blocked by pre-incubation with 5% goat serum in phosphate-buffered saline for 20 min at room temperature. The sections were incubated with a rabbit anti-LC3 antibody (diluted 1:3200, Cell Signaling, Danvers, MA, USA) in blocking buffer for overnight at 4 °C. Phosphate-buffered saline was used to wash sections. Sections and were then incubated with streptavidin-biotin complex at room temperature for 20 min. Following extensive phosphate-buffered saline washes, sections were subjected to 2% 3,3′-diaminobenzidine in 50 mmol/L Tris buffer (pH 7.6) containing 0.3% hydrogen peroxide for 5–10 min to develop the color reaction. Sections were imaged (15 sections per rat) for LC3 positivity with an Olympus BX51 microscope/software (Olympus, Tokyo, Japan) and Image-Pro Plus v6.0 software (Media Cybernetics, Rockville, MD, USA). Two pathology experts blindly scored and analyzed five random fields from each section and plotted data using mean integrated optical density (mean IOD) = IOD/area.
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6

Autophagy Regulation Assay Protocol

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Fluo-3 AM and Lyso-Tracker Red were purchased from Beyotime (Shanghai, China). Rapamycin was purchased from Sigma-Aldrich (St. Louis, MO). Rabbit anti-LC3 antibody and rabbit anti-SQSTM1 / p62 antibody were purchased from Cell Signaling Technology (Danvers, MA). Rabbit anti-β-actin antibody, rabbit anti-FLAG polyclonal antibody, HRP-conjugated anti-rabbit IgG were purchased from Beyotime. Alexa Fluor 594- conjugated anti-rabbit IgG was purchased from Thermo Scientific. Rabbit anti-HA monoclonal antibody was purchased from Proteintech Group (Rosemont, IL).
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7

Western Blot Analysis of Protein Expression

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Extracted proteins were quantified using a BCA Protein Assay Kit (Beyotime, Nantong, China). The protein extracts (50 μg) were fractionated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to nitrocellulose membranes. After blocking with silk milk for 2 h at room temperature, the proteins were probed with primary antibodies and specific conjugated peroxidase-labeled secondary antibodies. The immunoreactive bands were visualized using a luminescent image analyzer (Amersham Imager 600; GE, MA, USA). Protein expression levels were determined by densitometry. All experiments were performed in triplicate. The primary antibodies used were as follows: rabbit anti-MCP-1 antibody (Cell Signaling Technology, MA, USA), rat ICAM-1 antibody (1 : 500; R&D Systems, MN, USA), rabbit anti-iNOS antibody (1 : 1000; Cell Signaling Technology), rabbit anti-LC3 antibody (1 : 1000; Cell Signaling Technology), rabbit anti-P62 antibody (1 : 1000; Cell Signaling Technology), and rabbit anti-GAPDH antibody (1 : 1000; Cell Signaling Technology).
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8

Materials and Reagents for Cell-based Assays

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The materials and chemicals were purchased from different companies as follows; STZ (Sigma Aldrich; Steinheim; Germany), transforming growth factor-β (TGF-β) ELISA kits (Sigma-Aldrich; St. Louis; MO; USA), SYBR Green Master Mix (Yekta Tajhiz company, Tehran, Iran), RNA extraction and cDNA synthesis kits (Yekta Tajhiz company, Tehran, Iran); OCT compound (Scigen; Melbourne; Australia); DAPI (Sigma-Aldrich; St. Louis; MO; USA); FITIC-conjugated goat anti-rabbit secondary antibody (Cat no: ab6717; Abcam; Cambridge; UK); rabbit anti-LC3 antibody (Cell Signaling; Danvers; MA; USA); OCT compound (Scigen; Melbourne; Australia); superoxide dismutase (SOD) (Randox Laboratories; UK); and malondialdehyde (MDA) (Merck; Germany). Primers were purchased from Takapouzist Company (Tehran; Iran).
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9

Western Blot Analysis of Autophagy Markers

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Cell lysates with equal amounts were extracted from the heart and brain samples for Western blot analysis. Protein concentration was measured using the bicinchoninic acid method (Thermo Scientific). Samples were loaded at 12% Tris glycine gels, subjected to sodium dodecyl sulfate–polyacrylamide gel electrophoresis, and transferred onto polyvinylidene difluoride membranes (Millipore, USA). The membrane was blocked with 5% non-fat dry milk for 2 hours and incubated with primary antibody overnight at 4°C. Immunoblotting was conducted using rabbit anti-LC3 antibody (1:1000, Cell Signaling Technology, 2775S), rabbit anti-Beclin antibody (1:1000, Cell Signaling Technology, 3495S), rabbit anti-p62/SQSTM1 antibody (1:1000, Cell Signaling Technology, 5114S), rat anti-a7nAChR (1:200 Santa Cruz Biotechnology, sc-58607), mouse anti-GAPDH antibody (1:1000, Nakasugi Jinqiao). The membranes were then incubated with species-appropriate secondary antibodies for 1 hour at room temperature. The protein bands were visualized with a Bio-Rad Gel Imager.
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