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8 protocols using integrin αv

1

Comprehensive Immunohistochemical Analysis of Tissue Samples

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The following antibodies were used: N-cadherin (clone GC4, Sigma-Aldrich C3865, 1:100 dilution), FSP1 (Abcam ab58597, 1:100 dilution), PDGFRα (R&D Systems AF1062, 1:50 dilution), Collagen I (Rockland 600–401–103–0.1, 1:150 dilution), Collagen III (Abcam ab7778, 1:150 dilution), Fibronectin (Abcam ab23750, 1:200 dilution), α-SMA (Abcam ab5694, 1:100 dilution), CD31 (Novus Biologicals NB100-2284, 1:500 dilution), EpCAM (Abcam ab92382, 1:500 dilution), Lyve-1 (Abcam ab14917, 1:500 dilution), Myf-5 (clone C-20, Santa Cruz sc-302, 1:500 dilution), CD45 (clone IBL-3/16, Abcam ab23910, 1:500 dilution), FABP4 (clone EPR3579, Abcam ab92501, 1:500 dilution), F4/80 (Abcam ab90247, 1:500 dilution), Cytokeratin 14 (clone EPR17350, Abcam ab181595, 1:200 dilution), Integrin αv (clone EPR16800, Abcam ab179475, 1:500 dilution), α1-catenin (clone EP1793Y, Abcam ab51032, 1:500 dilution), decorin (Abcam ab175404, 1:500 dilution), DLK-1 (Abcam ab21682, 1:200 dilution) and Ki67 (clone SP6, Abcam ab16667, 1:500 dilution). Fluorophore-conjugated secondary antibodies were purchased from Thermo Fisher Scientific (1:500 dilution). Exherin (ADH-1) was from TargetMol (T2637).
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2

Protein Expression Analysis in Aortic Tissue

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Protein-extracts from iPSC-derived or aortic root/ascending aortic tissue lysates (MFS patients: n = 3; donor control: n = 1) were resolved by SDS-PAGE (10% A/BA Novex Bis/Tris gels, Thermo Fisher). Protein fractions separated onto the gels were transferred to PVDF membranes (Thermo Fisher). The membranes were blocked with SeaBlock solution (Thermo Fisher) for 60 min and then probed with primary antibodies to detect: MRC2 (Abcam, Cambridge, MA), MMP2 (Cell Signaling Technology, Boston, MA), Col 1A1 (Abcam), Integrin αV (Abcam), and GAPDH (Cell Signaling Technology) as loading control/house-keeping marker. Secondary anti-rabbit-HRP (Sigma-Aldrich) and anti-mouse-HRP (Sigma-Aldrich) antibodies were used to detect primary immuno-complexes. Detection was performed using the ECL system (Thermo Fisher).
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3

Protein Expression Analysis by Western Blot

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Tissues or cells were totally lysed in RIPA buffer with protease and phosphatase inhibitors (Roche). Protein extracts were electrophoresed through sodium dodecyl sulfate-polyacrylamide gels and transferred to polyvinylidene fluoride membranes59 (link). Membranes were blocked with blocking buffer (5% dry milk) in Tris-buffered saline with 0.1% Tween-20 for 60 min at room temperature and incubated with primary antibodies (Integrin αv, Abcam, cat# ab179475, 1:2000; Integrin β3, Abcam, cat# ab38460, 1:1000; β-actin, Cell Signaling Technology, cat# 4970 s, 1:1000; ATP6V0d2, Bioss, cat# bs-12548R, 1:1000; MMP9, Abcam, cat# ab38898, 1:1000; JNK, Cell Signaling Technology, cat# 9252 s, 1:1,1000; P-JNK, Cell Signaling Technology, cat# 9255 s, 1:1,1000) diluted in blocking buffer overnight at 4 °C. These membranes were incubated with secondary antibodies, and hybrid HRP was detected using Pierce™ ECL Western Blotting Substrate (Thermo Fisher Scientific, cat# 32106) and quantified with ImageJ (version 1.52 v). Western blot data in the figures are representative of 3 or more independent experiments. The uncropped and unprocessed scans of the blots are provided in the Source Data file.
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4

Investigating UGT8 and Sox10 in Cancer

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UTG8 shRNA was purchased from MISSION shRNA at Sigma-Aldrich. Human UGT8 and Sox10 were amplified from a MDA-MB231 cDNA library and subcloned into pLVX-Puro.
Sulfatide and GalCer were purchased from Avanti Polar Lipids and Abcam, respectively. Antibody against UGT8 was from Protein Tech Group. Antibodies against Sox10, Smad4, Smad5, Integrin αV, and Integrin αVβ5 were from Abcam. Antibodies against RelA and Phospho-Smad1 (Ser463/465)/Smad5 (Ser463/465)/Smad9 (Ser465/467) were from Santa Cruz and Cell Signaling Technology, respectively. Antibodies for galactocerebroside, Sulfatide, and Integrin αVβ3 were purchased from Millipore Sigma. Antibodies for ID4 and β-actin were from BioCheck and Sigma-Aldrich, respectively.
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5

Characterization of Monosialoganglioside GM1 and Derivatives

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Monosialoganglioside GM1 and N-Hexanoyl-biotin-Monosialoganglioside GM1 (GM1-biotin) were purchased from Matreya LLC (State College, PA, USA). GM1-Pentasaccharide was obtained from Carbosynth (Compton, UK). An antagonist for chemokine receptor CCR2 (RS 102895) was purchased from Santa Cruz Biotechnology Inc. (Santa Cruz, CA, USA). D-(+)-Mannose, N-Acetyl-D-galactosamine, D-(+)-Galactose and D-(+)-Glucose were obtained from Sigma-Aldrich (St. Louis, MO, USA). Matrigel was purchased from BD Biosciences (Franklin Lakes, NJ, USA). Heparin was obtained from JW Pharmaceutical (Seoul, Korea). Antibodies were purchased as follows: Anti-Arginase (Arg) 1, mannose receptor (CD206), YM1, MCP-1, IL-10, interferon gamma (IFN-γ), IL-2 receptor gamma (γC), and integrin αV were purchased from Abcam (Cambridge, UK). Anti-p-STAT3, p-STAT5, TNF-α, and IL-1β were obtained from Cell Signaling Technology (Danvers, MA, USA). Anti-p-STAT1, p-STAT6, STAT, STAT3, STAT5, STAT6, F4/80, VEGF, and GAPDH were purchased from Santa Cruz Biotechnology Inc. Anti-β-actin was obtained from Sigma-Aldrich. Anti- nitric oxide synthase (iNOS) was purchased from Millipore (CA, USA).
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6

Protein Expression Analysis of BM-MSCs

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BM-MSCs were lysed in ice-cold RIPA lysis buffer supplemented with protease inhibitor cocktail and insoluble debris was removed from the supernatant lysate by centrifuging at 15,000 × g for 15 min. Protein concentration was examined using BCA Protein Assay (Thermo Scientific, Waltham MA). 50 μg of total protein was loaded in each lane of 10% SDS-PAGE and transferred to nitrocellulose membranes. After the non-specific binding was blocked using 3% non-fat milk in TBST, membranes were incubated with primary antibodies against ALP (1:1000 dilutions, Abcam, UK), BMP4 (1:20000 dilutions, Abcam, UK), RUNX2 (1 µg/ml, Abcam, UK), Spp1 (1.25 µg/ml, Abcam, UK), Colla1 (1 µg/ml, Abcam, UK), FNDC5 (1:3000 dilutions, Abcam, UK), Irisin ((1:3000 dilutions, Abcam, UK), integrin αv (1:5000 dilutions, Abcam, UK) and GAPDH (1:1000 dilutions, Abcam, UK) overnight at 4 °C. Membranes were then washed three times with 0.1 M PBST, followed by incubation with horseradish peroxidase (HRP)-conjugated secondary antibodies for 1 h at room temperature. Blots were developed and detected using Pierce ECL chemiluminescent substrates (Thermo Scientific, Waltham, MA).
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7

Western Blotting of Cell Signaling Proteins

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Western blotting was performed according to a previously described protocol 10 (link). The cell pellet was washed with cold PBS once and then lysed with RIPA buffer (Thermo Scientific) containing protease inhibitor, and phosSTOP phosphatase inhibitor cocktail (Roche, Welwyn Garden, Swiss, UK). The lysates were centrifuged at 14,000 rotations per minute for 15 minutes at 4°C, and then the cleared supernatant was collected. The proteins were separated by sodium dodecylsulfate-polyacrylamide gel electrophoresis (SDS-PAGE), electroblotted onto nitrocellulose membranes and probed with primary antibodies. The primary antibodies used for western blotting were against integrin β3 (Abcam, Cambridge, UK), integrin β1 (Abcam, Cambridge, UK), integrin αv (Abcam, Cambridge, UK), phosphor-mTOR (Abcam, Cambridge, UK), mTOR (Abcam, Cambridge, UK), phosphor-ERK1/2 (Cell Signaling Technology, USA), ERK1/2 (Cell Signaling Technology, USA), phosphor-Akt (Cell Signaling Technology, USA), Akt (Cell Signaling Technology, USA), Bcl-2 (Proteintech, China), Bax (Proteintech, China), cleaved caspase 3 (Cell Signaling Technology, USA) , PTEN (Cell Signaling Technology, USA) and β-actin (Sigma, USA). The immunoreactive bands were visualized using an ECL reagent (Pierce, Rockford, IL, USA).
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8

Implantation Regulation by Mifepristone and Progesterone

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Mifepristone and progesterone were obtained from the pharmacy department of Yueyang Hospital of Integrative Traditional Chinese and Western Medicine; hematoxylin-eosin, Antifade Polyvinylpyrrolidone Mounting Medium, and nitric oxide (NO) assay kit were purchased from Beyotime (China); the antibodies ERα, ERβ1, PR, Integrin αV, Integrin β3, OPN, LIF, eNOS, and p-eNOS were purchased from Abcam (UK); vascular endothelial growth factor (VEGF) and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) were purchased from Proteintech (USA); Alexa Fluor 488 nm, Alexa Fluor 555 nm, Akt, p-Akt, and β-tubulin were purchased from CST (USA); Lycopersion Esculentum Lectin was purchased from Vector Laboratories (USA); DAPI was purchased from Sigma (USA); chemiluminescence detection kit was purchased from Millipore (USA).
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