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12 protocols using p smad2

1

Autophagy and EMT Regulation Pathways

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Chloroquine (CQ), 3-methyladenine (3-MA), rapamycin and TGF- β2 were purchased from Sigma-Aldrich (St Louis, MO, USA). LY2109761 was from Selleck Chemicals (Houston, TX, USA). Antibodies against microtubule-associated protein 1 light chain 3-I (LC3-I), LC3-II, p62, Beclin 1, ATG7, poly (ADP-ribose) polymerase (PARP), cleaved-PARP, caspase 9, cleaved-caspase 9, Bax, and Bcl-x1 were from Abcam (Cambridge, MA, USA). Antibodies against TGF-β2, Smad2, p-Smad2, E-cadherin, α-catenin, β-catenin, N-cadherin, fibronectin, ZO-1, Vimentin, MMP-9, Snail, Slug and β-actin were from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Primary antibodies of LC3-II and E-cadherin and secondary antibodies Alexa Fluor 568 anti-mouse IgG and Alexa Flour 568 anti-rabbit antibodies were from Jackson Immuno Research (Lancaster, PA, USA).
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2

Immunoblotting and Immunoprecipitation Protocols

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Antibodies against the following epitopes were used for immunoblotting, immunoprecipitation, or immunofluorescence: HA (Y11) and ubiquitin (P4D1), from Santa Cruz Biotechnology; p-Smad2, generated at the Ludwig Institute for Cancer Research, Uppsala, Sweden; and Smad2, p-Smad2, p38, p-p38, and HA, from Cell Signaling. Lys63 polyubiquitin mouse monoclonal antibody was obtained from Enzo Life Sciences. An antibody against TRAF6 was obtained from Zymed Laboratories. Horseradish peroxidase-conjugated secondary anti-rabbit and anti-mouse antibodies were purchased from GE Healthcare and Dako, respectively. Light chain-specific anti-rabbit and anti-mouse antibodies were obtained from Jackson Laboratory. Secondary donkey anti-rabbit Alexa Fluor 555 antibodies and goat anti-mouse Alexa Fluor 488 antibodies (Invitrogen) were used for immunofluorescence. Tris-buffered saline and phosphate-buffered saline (PBS) were purchased from Medicago. Protein-G Sepharose was obtained from GE Healthcare, LumiLight Western Blotting Substrate and Pefabloc were purchased from Roche Life Science, and PageRuler Prestained Protein Ladder was obtained from Fermentas.
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3

Protein Extraction and Western Blotting

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Nuclear and cytoplasmic proteins were extracted according to the manufacturer's instructions (Sigma, #NXTRACT). Western blotting was performed as described in detail in a previous study [26 (link)]. Primary antibodies used in current study included anti-mouse Yap1 (Abcam, #ab56701), TAZ (Cell signaling, #4883), Histone H4 (Santa Cruz, #sc-25260), Hsp90 (Santa Cruz, #sc-8262), p-Smad2 (Santa Cruz, #sc-101801), Smad3 (Cell signaling, #9513), p-Smad3 (Santa Cruz, #sc-11769), Krt14 (Santa Cruz, #sc-43310), Krt18 (Santa Cruz, #sc-45406) and p63 (Abcam, #ab124762).
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4

Resveratrol Modulates TGF-beta1 Signaling

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Resveratrol was purchased from Shanghai Standardization for the Traditional Research Center and dissolved in dimethyl sulfoxide (DMSO). Human TGF-beta1 was obtained from PeproTech (USA). 3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium, inner salt (MTS) was purchased from Promega (Madison, WI, USA). QuicBlockTM Blocking Buffer for Immunol Staining, Antifade Mounting Medium with DAPI, QuicBlockTM Secondary Antibody Dilution Buffer for Immunofluorescence and QuicBlockTM Primary Antibody Dilution Buffer for Immunol Staining were purchased from Beyotime (Shanghai, China). Antibodies against MMP-2, MMP-9, α-SMA, Smad2, Smad3, P-Smad2, P-Smad3, Snail1, and Slug were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Fibronectin, P-PI3K, PI3K, P-AKT, AKT, E-cadherin, and vimentin antibodies were purchased from Cell Signaling Technology (Boston, MA, USA). LY290042, SB431542, SP600125, PDTC, and PD98059 were purchased from Selleck Chemical (Houston, TX, USA). PDTC and PD98059 were purchased from MedChemExpresss (New Jersey, NJ, USA). IRDyeTM fluorescence antibodies were obtained from Li-Cor Bioscience (Lincoln, NE, USA).
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5

Western Blot Analysis of Protein Markers

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Protein samples were separated on SDS-PAGE gels (Bio-Rad) and then transferred to PVDF membranes (Bio-Rad Laboratories). The membranes were blocked with 5% nonfat milk and incubated with antibodies against FBN1, SMAD2/3, phosphorylated SMAD2 (p-SMAD2), and GAPDH (Santa Cruz) at 4 °C overnight followed by washing with TBS-T solution for three times. Membranes were incubated in horseradish peroxidase (HRP)-labeled secondary antibodies (Biorad) for 30 min. and followed by TBS-T washing three times. Finally, target protein bands on the membranes were visualized using chemiluminescent HRP substrate (Biorad).
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6

Quantitative Protein Analysis Using Western Blot

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The concentration of protein in the lysed sample was analyzed using a bicinchoninic acid assay kit (Thermo Scientific, Pierce, Rockford, IL) after heating at 95°C for 5 min. First, the desired volume of samples was loaded in 10% SDS-polyacrylamide gels and run at a constant voltage. The separated proteins were then transferred to a nitrocellulose membrane (Trans-Blot TurboTM, BIO-RAD). Subsequently, the transferred membrane was cut at the desired part and incubated with a blocking buffer before incubation with the desired antibodies.
The level of p-SMAD2, SMAD7, ATG5, p62, p-AKT, p-mTOR, Bcl2, Bax, caspase-3, β-actin (Santa Cruz Biotechnology (Dallas, TX, USA), LC3BI/II, p-p38, p-ERK, α-SMA, Col1A1, and p-IκBα (Cell Signaling Technology, Beverly, MA, USA) were evaluated by incubating (4°C) the membrane overnight with the appropriate primary antibodies at a 1:1000 dilution of their original antibodies. The goat anti-rabbit and anti-mouse IgG-HRP polyclonal antibodies (AbFrontier, Seoul, South Korea) were used as the secondary antibodies. The optical protein bands were detected by adding a mixture (1:1 ratio) of a western blot detection solution A and B (SUPEX, Neonex Co., Ltd, Postech, South Korea), after which the area of the densitogram peak was estimated using the Image J software (National Institute of Health, Bethesda, MD, USA).
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7

TGF-β signaling pathway protocol

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Mv1Lu and NMuMG cells were obtained from ATCC (Manassas, VA). Na [125I] (17 Ci/mg) was obtained from ICN Biochemicals (Irvine, CA). DMEM, high molecular mass protein standards (myosin, 205 kDa; β-galactosidase, 116 kDa; phosphorylase, 97 kDa; bovine serum albumin, 66 kDa), chloramine-T, disuccinimidyl suberate (DSS) and other biochemical reagents were obtained from Sigma (St Louis, MO). TGF-β (TGF-β1) was purchased from Austral Biologicals (San Ramon, CA). Rabbit polyclonal antibodies to caveolin-1 (N-20), early endosome antigen 1 (EEA1), hemagglutinin (HA) epitope [Tsukazaki et al., 1998 (link)], P-Smad2, Smad2, P-Erk1/2, Erk1/2, α-actin, P-JNK, JNK, P-p38, p38, α-tubulin, TβR-I (ALK-5) and TβR-II, and SB-505124 [DaCosta Byfield et al., 2004 (link)] were obtained from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). TGF-β peptide antagonist [Huang et al., 1997 (link); Huang and Huang, 2005 (link); Singer et al., 2009 (link)] was synthesized by C S Bio Co. (Menlo Park, CA). The luciferase assay system was obtained from Promega (Madison, WI). The TβR-II-HA plasmid was purchased from Addgene (Cambridge, MA). The COL1A2-luc plasmid was constructed as described [Poncelet et al., 1999 (link)]. The SBE4-luciferase reporter plasmid was constructed as described [Jonk et al., 1998 (link)].
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8

Epithelial-Mesenchymal Transition Modulation

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VPA was purchased from Sigma-Aldrich Co. (Tokyo, Japan) and used at concentrations of 0.1, 0.5, 1, 5 and 10 mM. VPA was dissolved in phosphate-buffered saline (PBS) to a stock concentration of 100 mM and stored at −20°C. TGF-β1 was purchased from Sigma-Aldrich and used at a concentration of 10 ng/ml. Mouse monoclonal antibodies to E-cadherin, vimentin, TGF-β1, Smad2, Smad3, matrix metalloproteinase 9 (MMP-9), HCAM (CD44), and β-catenin and rabbit polyclonal antibodies to phosphorylated Smad2 (p-Smad2), phosphorylated Smad3 (p-Smad3), Twist, Snail, Slug, and MMP-7 were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Rabbit polyclonal antibodies to MMP-2 were obtained from Millipore (Billerica, MA, USA). Mouse monoclonal antibodies to β-actin and HIF-1α were obtained from Sigma-Aldrich and Thermo Fisher Scientific (Rockford, IL, USA), respectively.
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9

Investigating TGF-β1 Signaling Pathways

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LPS (Sigma; Escherichia coli serotype 055:B5), recombinant human TGF-β1 (R&D Systems) were used in this study. The antibodies used for the western blot analysis, and are p-JNK (catalog no. sc-81502), JNK (catalog no. sc-7345), p38 (catalog no. sc-398305), p-p38 (catalog no. sc-17852-r), p-Smad2 (catalog no. sc-101801), Smad2 (catalog no. sc-39312), p-Smad3 (catalog no. sc-101154), and Smad3 (catalog no. sc-130218), all purchased from Santa Cruz Biotechnology, Inc. NF-κB inducible reporter plasmid were purchased from InvivoGen (cat no: pnifty2-luc, San Diogo, CA). Lipofectamine 2000 transfection regent was purchased from Invitrogen.
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10

TGF-β1 Signaling Pathway Modulation

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TGF-β1, TβRΙ, Smad2, p-Smad2 and GAPDH antibodies were purchased from Santa Cruz Biotechnology, Inc. Collagen I, Collagen III and NF-200 antibodies were purchased from Abcam. The α-SMA antibody was purchased from Boster Biological Technology. The TGF-β1/SMAD signaling agonist, SRI-011381 hydrochloride, and the inhibitor, SB-431542, were purchased from Selleck Chemicals unless otherwise specified.
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