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13 protocols using percp cy5.5 cd11b

1

Liver Macrophage Phenotyping and Pyroptosis

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Animals were sacrificed and livers were collected as described above. Fractionated immune cells were collected. Cells were incubated with CD16/CD32 FcR-blocking antibody (BD Bioscience, 553142) on ice for 20 minutes. Live/Dead staining was performed using Zombie Aqua (Biolegend, 423101) with a 30-minute incubation on ice. HMΦ surface staining was performed using the following panel: APC-Cy7_CD45 (BioLegend, 103116), FITC_I-A/I-E (MHCII) (BioLegend, 107605), PerCP-Cy5.5_CD11b (BioLegend, 101228), BV510_Ly6G (BioLegend, 127633), BUV395_F4/80 (BD Biosciences, 565614), BV421_CCR2 (BioLegend, 150605), APC_Ly6C (BioLegend, 128016), PE-Cy7_CD206 (ThermoFisher, 25-2061-82), BV785_CD86 (BioLegend, 105043). HMΦ pyroptosis was performed using the following panel: FAM-LEHD-FMK (caspase-11 activity assay), APC-Cy7_CD45 (BioLegend, 103116), BV510_Ly6G (BioLegend, 127633), PerCP-Cy5.5_CD11b (BioLegend, 101228), Ly-6C_AF700 (BioLegend, 128024), BUV395_F4/80 (BD Biosciences, 565614), GSDMDC1_AF674 (Santa Cruz Biotechnology, sc-393581 AF647). Flow cytometric data was acquired using LSR-II Flow Cytometer (BD Bioscience). Mean fluorescent intensity (MFI) and population percentages were analyzed using FlowJo (Ashland, OR).
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2

Peritoneal Immune Cell Profiling

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Single-cell suspensions from peritoneal lavage were stained with APC-CD45, PerCP-Cy5.5-CD11b and PE-Ly6G (BioLegend). Data were acquired on the FACSCanto II (BD Biosciences) and analysed by FlowJo Software.
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3

Isolation of Single-Cell Populations from Tamoxifen-Treated Mice

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Single-cell solutions from P and PL mice were prepared according to previous reports. Briefly, 6-week–aged mice P and PL were treated with 180 mg/kg of TAM for 5 consecutive days. Four days later, mice were anesthetized and then perfused with cold PBS. Pancreas was digested by collagenase (Sigma-Aldrich, St. Louis, MO; C9891-1G); then, cells eventually filtrated through a 5 ml polystyrene round-bottom tube with cell-strainer cap (Corning, Corning, NY; number 352235). All antibodies used for flow cytometry were purchased from Biolegend (San Diego, CA): APC-CD45 (103111; 1:100), Percp/Cy5.5-CD11b (101228; 1:100), and BV421-F4/80 (123137; 1:100). Cells were incubated with the antibodies in FACS buffer at 4°C for 15 minutes. After incubation, cells were washed once and resuspended into FACS buffer. Sorting experiments were conducted on BD FACSAria (BD Biosciences, Franklin Lakes, NJ) with BD FACSDiva software (BD Biosciences, http://www.bdbiosciences.com/en-us/instruments/research-instruments/research-software/flow-cytometry-acquisition/facsdiva-software).
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4

Murine Immune Cell Phenotyping

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Murine: I-A/I-E-BV421, B220-BV605, F4/80-BV711, Sirpα-PE-Cy7, CD45-FITC, TCR Vβ5.1, 5.2-APC, BV421-CD4, PE-Cy7 CD8a, PerCP-Cy5.5-CD11b, CD40-BV786, H2Kb/H-2Db-Alexa647 (BioLegend); TLR7-PE, CD24-BUV395, CD80-BUV737, F4/80-BV421, CD11b-APC (BD); and eBioscience Fixable Viability Dye eFluor 780 (Thermo Fisher Scientific). Western blotting: TRIF (Genentech,), MYD88 (Abcam), β-actin (Cell Signaling Technologies). Human: CD64-APC, CD80-BV786 (BD); CD163-FITC, B2M-PE, CD209-APC (DC-SIGN); CD86-PE, CD80-PE-Cy7 (BioLegend); and CD14-PerCP-eFluor 710, CD81-FITC (Invitrogen). LIVE/DEAD Fixable Aqua Dead Cell dye and LIVE/DEAD Fixable Blue Dead Cell Stain Kit for UV excitation were from Thermo Fisher Scientific.
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5

Cardiac Leukocyte Isolation Procedure

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Cardiac leukocyte isolation was performed as previously described (Eberhardt et al., 2019 (link)). Briefly, hearts were perfused with phosphate-buffered saline (PBS) and disaggregated mechanically and enzymatically with 0.2% trypsin solution (Gibco). The digested tissue was pressed through a 70 μm cell strainer (BD Falcon), and cells were isolated by 35 and 70% bilayer Percoll (GE Healthcare) density gradient centrifugation. Viable cell numbers were determined by trypan blue dye exclusion using a Neubauer chamber, and absolute cell number was obtained corresponding to the whole heart. Cells were stained with the following antibodies: anti-mouse fluorescein isothiocyanate (FITC)-CD3, APC-Cy7-CD4, PE-Cy7-CD8, PE-CD19, PerCP-Cy5.5-CD11b, FITC or APC-Cy7-CD11c, PE-F4/80, PE-Cy7-CD206, APC-Ly6G, and APC-Cy7-Ly6C (all from BioLegend). Stained samples were acquired using FACS Canto I and II cytometers (Becton Dickinson), and the data were analyzed using FlowJo software (Tree Star). Non-specific fluorescence was determined using isotype controls.
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6

Murine NK Cell Functional Analysis

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Nr-CWS was supplied by Greatest Biopharma Limited Company (purity>98%). Fluorescein conjugated anti-mouse antibodies APC-NK1.1, FITC-NK1.1, APC/Cy7-CD3ε, PE/Cy7-CD3ε, APC-CD4, PE-CD8α, PerCP/Cy5.5-CD11b, PE-CD27, FITC-TNF-α, and PerCP/Cy5.5-IFN-γ from BioLegend, and PerCP/Cy5.5-CD69, FITC-FasL, PE-TRAIL, PE-Perforin, and FITC-Granzyme-B from eBioscience were used in this study. TUNEL assay kit and MTS Cell proliferation, cytotoxicity or chemosensitivity assays kit (cat # 3580) were obtained from Promega. The LEGENDplex™ Multiplex mouse cytokine kit was provided by BioLegend. EasySep™ mouse NK cell isolation kit was from STEMCELL Technologies Inc. Recombinant murine IL-2 was from PeproTech Inc.
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7

Multiparameter Immune Cell Profiling

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Cell suspensions were stained with appropriate antibodies for 30 min on ice. The commercial antibodies used in this study included anti-mouse FITC-CD45 (BioLegend, CA, USA, #103108; 1 µg per 106 cells), PE-CLEC2 (BioLegend, CA, USA, #146104; 1 µg per 106 cells), BV421-F4/80 (BioLegend, CA, USA, #123137; 1 µg/106 cells), Pe/Cy7-CD64 (BioLegend, CA, USA, #128016; 1 µg per 106 cells), Percp/Cy5.5-CD11b (BioLegend, CA, USA, #101228; 1 µg per 106 cells), APC/Cy7-PirB (R&D, CA, USA, #FAB2754S; 5 µg per 106 cells), APC-Ly6C (BioLegend, CA, USA, #128016; 1 µg per 106 cells), APC-Ly6G/Ly-6C (Gr-1) (BioLegend, CA, USA, #108411; 1 µg per 106 cells), PerCP-CD19 (BioLegend, CA, USA, #115531; 1 µg per 106 cells), APC-CD3 (BioLegend, CA, USA, #100235; 1 µg per 106 cells), APC-CD206 (BioLegend, CA, USA, #141707; 2 µg per 106 cells), and FITC-CD11c BioLegend, CA, USA, #117305; 1 µg per 106 cells); and anti-human PE-CD14 (BD Biosciences Pharmingen, USA, #555398; 20 µl per 106 cells), Mouse anti-human LILRB2 (R&D, R&D Systems, MN, USA, #MAB2078; 0.25 µg per 106 cells), and Goat Anti-Mouse FITC-IgG (Servicebio, Wuhan, China, #SF131; 1:200 dilution). All antibodies were diluted according to the manual from the manufacturer’s website. Dead cells and doublets were removed by dead-cell dye staining (Zombie Aqua Fixable Viability Kit, BioLegend, CA, USA, #B297827).
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8

Isolation and Immunophenotyping of Mouse Hematopoietic Cells

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Bone marrow and spleen of a transplant recipient mouse were harvested, and single cell suspensions were prepared as previously described34 (link). Briefly, the femurs and tibias were dissected using sterile technique, flushed with PBS/5% FBS, and cells were passed through a 70 μm strainer. Spleens were dissected cleanly using sterile technique, placed on a 70 μm strainer and using the plunger end of a syringe, gently passed through the strainer. Red blood cells were lysed using RBC lysis buffer (Biolegends, San Diego, California). Cells were resuspended in PBS/5% FBS, and then counted using a Cellometer Mini cell counter (Nexcelom, Lawrence, MA). One million cells of each sample were then distributed into microcentrifuge tubes and labelled with fluorochrome-conjugated antibodies APC/Cy7-B220, FITC-Ter119, PE/Cy7-Gr1, and PerCP/Cy5.5-CD11b (all antibodies were purchased from Biolegends and added at predetermined optimum concentrations). Immunophenotyping was performed in the UVA Flow Cytometry core lab using a Fortessa cytometer, and data were analyzed using the FlowJo program (FlowJo LLC, Ashland, Oregon).
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9

Irf8-induced moDC activation by LPS

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72 hours following moDC selection, all non-adherent and loosely bound cells were collected and harvested by centrifugation. Cells were washed, resuspended with MACS buffer (1x PBS, 0.5% BSA, 2mM EDTA), and stained with perCP/cy5.5 -Cd11b (Biolegend, 101228) for 30min., washed and after filtration through a 70um strainer sorted for Cd11b+ cells with FACSAria III cell sorter (BD Biosciences). Irf8 expression was induced by adding 1ug/ml doxycycline hyclate (Sigma) to medium containing 20ng/ml GM-CSF for 48 hours, then cells were treated with LPS for 4 hours.
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10

Modulation of MDSCs and CD8+ T cells

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Isolated MDSCs were cultured in the indicated conditioned medium for 24h, followed by FACS analysis using MDSC markers PerCP/Cy5.5-CD11b (BioLegend #101228), APC-Ly6G (BioLegend # 127613), Arg1 (Cell Signaling #93668S) and iNOS (Cell Signaling #13120S). The purified 5×105 CD8+ T cells were mixed with pre-washed Dynabeads Mouse T-Activator CD3/CD28 (Life Tech #11456D), and cultured in the indicated conditioned medium for 24h, followed by FACS analysis using CD8+ T cell markers PerCP/Cy5.5-CD8a (BioLegend #100733), FITC-IFN-γ (BD Biosci # 554411) and PE-Ki67 (BioLegend #151209).
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