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7 protocols using streptavidin peroxidase

1

Quantification of Salivary IgG and IgA

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Concentrations of IgG and IgA in each saliva sample were quantified by ELISA using human IgA and IgG standards (10 to 100 μg.ml-1; Invitrogen, Paisley, UK) to obtain a standard curve. Two dilutions (1:500 and 1:1000) of each saliva sample (50 μl) were prepared in PBS (0.1M, pH 7.0) (three technical replicates) and incubated for 18 h in 96 well flat-bottomed microtitre plate (Nunc MaxiSorp, Fisher Scientific, Loughborough, UK) at 4°C. Following incubation, wells were blocked with 200 μl of 1% bovine serum albumin in PBS for 30 min followed by three washes with PBST (PBS with Tween 20 at 0.1% v/v). Bound antibody was probed with 50 μl of 1:10,000 (in PBST) biotinylated (goat) anti-human IgG or IgA and incubated at RT for 45 min, followed by washing with PBST. Streptavidin-peroxidase (1:10,000 in PBST) (Roche, Hertfordshire, UK) was added to each well for 30 min and washed with PBST. O-phenyl diamine dihydrochloride (200 μl of 0.4 mg.ml-1) in 0.05M phosphate-citrate buffer at pH 5.0, with hydrogen peroxide (40 μl, 20% (v/v)), was added to each well and incubated in the dark for 30 min before reading at 450 nm in a PowerWave XS plate reader (BioTek Instrumentation Inc., Bedfordshire, UK). All saliva samples were diluted before the positive selection procedure to give equal concentrations of IgA and IgG in each sample.
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2

IgG1 and IgG2c Antibody ELISA

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Following euthanasia, approximately 300 μl of blood was collected via cardiac puncture of the right ventricle using a 25g needle attached to a 1 ml syringe, transferred into serum separator tubes (Becton Dickinson, Franklin Lanes, NJ), centrifuged, and serum was kept frozen at −80°C. For IgG1 and IgG2c, indirect ELISAs were performed. 96-well plates were coated overnight at 4°C with 2 μg/ml ovalbumin, UV-inactivated uricase, or human serum albumin in PBS (pH 7.2–7.4), washed with 0.05% Tween-20 in PBS, and blocked for 2 hours at 4°C with 1% BSA in PBS. Plates were washed and serum serially diluted in blocking solution was applied to the wells in triplicate and incubated overnight at 4°C. Plates were washed and 2 μg/ml biotinylated anti-mouse IgG1 or IgG2c secondary antibodies (Pharmingen) in 1% BSA/PBS were incubated in the plates at room temperature for 1 hour. Plates were washed and 0.05 U/ml streptavidin/peroxidase (Roche) was incubated in the plates at room temperature for 1 hour. Plates were washed, developed using reagents from R&D Systems (Minneapolis, MN), stopped with 1N H2SO4, and optical densities (ODs) were read using a BioTek Instruments PowerWaveX (Winooski, VT) at 450 nm with background subtraction at 570 nm.
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3

Quantification of Neutrophil Chemoattractant KC

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KC (Peprotech, 25 ng/reaction) was incubated with chamber fluid at 37°C for 14 h with or without Roche Protease Inhibitor as indicated. 2 x SDS PAGE sample buffer was added and samples were separated on 4–20% Tris-MOPS gels (Genscript), and transferred to PVDF membranes. KC was identified using a biotinylated rabbit anti-mouse KC antibody (Peprotech) followed by streptavidin peroxidase (Roche). Three samples from individual mice were analyzed in parallel.
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4

ELISA for Antibody Detection

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For the detection of TNP-specific antibodies, high binding plates (Costar) were coated with 4 μg/ml TNP18-BSA (Biosearch Technologies) diluted in PBS. For the detection of natural antibodies, plates were coated with either 8 μg/ml Pneumo23® vaccine (Sanofi Pasteur) or 5 μg/ml PC16-BSA (Biosearch Technologies) in PBS. For the detection of total IgG or IgM levels in serum, plates were coated with 3 μg/mL anti-mouse IgG (Sigma) or 3 μg/mL F(ab′)2 fragments anti-IgM (Jackson Immunoresearch). Serum samples were added at an optimal dilution chosen from a previous titration curve. Bound antibodies were detected using either anti-mouse IgG peroxidase (Sigma), or biotin-conjugated goat anti-mouse IgM, IgG1, IgG2a, IgG2b, and IgG3 (Jackson Immunoresearch) and streptavidin-peroxidase (Roche). Plates were developed with o-Phenylenediamine dihydrochloride (OPD) (Sigma), and read on an Epoch plate reader at 405 nm.
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5

PBMC ELISPOT for IFN-γ and IL-10 Response

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2 × 105 PBMC were plated onto ELISPOT plates (Millipore, Burlington, MA) pre-coated with anti-IFN-γ (10 μg/ml, Mabtech, clone 1-D1K) or anti-IL-10 (10 μg/ml, Mabtech clone 9D7) capture Abs in X-VIVO15 medium (Lonza, Verviers, Belgium) supplemented with 5% human serum (Lonza) and penicillin/streptomycin (Euroclone) alone or with the gliadin peptide (DQ2.5-glia-α1,2 QLQPFPQPELPYPQPQP, hereafter glia-peptide). After 42–48 h, IFN-γ- or IL-10-producing cells were detected by biotin-conjugated anti-IFN-γ (1 μg/ml, Mabtech clone 7-B6–1) or anti-IL-10 (1 μg/ml, Mabtech clone12G8) Abs, followed by streptavidin-peroxidase (Roche) and reaction with 3-Amino-9-ethylcarbazole substrate (BD Biosciences). Spots were counted by ImmunoSpot-S6-ultraV (Cellular Technology Limited, Shaker Heights, OH, USA). A peptide pool (PepTivator® CMV pp65, Miltenyi Biotec) and phytohemagglutinin (PHA, Sigma-Aldrich) were used as controls. Results were normalized to spot forming units (SFU)/106 PBMC. Patients were considered responders (R) if the absolute SFUs in response to -glia 17mer exceeded the SFUs count of negative control peptide wells.
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6

ADP-Ribosylation of Elongation Factor 2

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Cells were seeded into 24-well plates (MDA-MB-231 75.000/well, HeLa 50.000/well). The cells were pre-incubated with BafA1 (30 nM) for 30 min at 37 °C followed by addition of His6-DTA (5 µg/mL) with or without PA63 (1 µg/mL), respectively. After another 12 h incubation at 37 °C the cells were washed 3× with ice-cold PBS, the supernatant was discarded and the cells put to −20 °C. Sample preparation was done as described before for cell-free systems. In brief, lysis was performed on ice in assay buffer (Tris-HCl (20 mM, pH 7.5), EDTA (1 mM), DTT (1 mM), MgCl2 (5 mM), Complete (1×)) via scraping of the cells. Lysates were transferred into tubes and incubated with 100 ng His6-DTA and 250 pmol biotinylated NAD+ (#TRE-4670-500-01, Biozol Diagnostica, Eching, Germany) for 30 min at 37 °C. Hot 5× Laemmli buffer + DTT (100 mM) was added to terminate the reaction (final concentration 1×) and the samples were boiled for 10 min at 95 °C. After SDS-PAGE and Western blotting the biotinylated elongation factor 2 (EF-2) was detected via a streptavidin-peroxidase (#11089153001, Roche Diagnostics, Mannheim, Germany) using the ECL system as described earlier [32 (link)]. In addition, GAPDH was detected for loading control.
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7

Antibody Validation for Protein Analysis

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Antibody against Rad51 was from Abcam (Cambridge, UK) and antibodies against Akt, p-Akt, beclin-1 and LC3B were from Cell Signaling (Denver, CO). The antibodies against ß-actin, Hsp90, p62/ SQSTM1, proliferating cell nuclear antigen, NF-κB and p53 were obtained from Santa Cruz Biotechnology (Heidelberg, Germany). Poly (adenosine diphosphate ribose) polymerase-1 antibody (PARP-1; clone CII10) was a kind gift of Prof. Dr Alexander Bürkle (University of Konstanz, Germany). Streptavidinperoxidase was purchased from Roche (Mannheim, Germany) and MGMT antibody was from Merck Millipore (Billerica, USA). All antibodies were tested for specificity and have been used previously in numerous studies (23, (31) (32) (33) (34) (35) .
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