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3 protocols using anti phospho nf kb p65 ser536

1

Cellular Protein Analysis via WES

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Cell protein was extracted using RIPA lysis buffer containing protease and phosphatase inhibitor cocktails (cat. no. 539134, Millipore and cat. no. 78420, Thermo Fisher Scientific), and the protein concentration was determined using the protein assay kit (cat. no. 23200, Thermo Fisher Scientific, United States). Separation of proteins was subjected to the WES system (ProteinSimple, United States) and 12–230 kDa separation modules were used. For target proteins detection, the following antibodies were used: anti-NF- kB p65 (Cell Signaling Technology, #6956), anti-phospho- NF- kB p65 (Ser536) (Cell Signaling Technology, #3033), anti-Nrf2 (Cell Signaling Technology, #12721), anti-IL-6 (Abcam, ab9324), and anti-GAPDH (Novus Biologicals, NB300-325).
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2

Proteomic Analysis of Colon Tissue Fractions

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Colon tissues, cells, and EVs fractions were homogenized using the RIPA buffer (Jiangsu KeyGEN BioTECH, Nanjing, China), phosphatase inhibitor cocktail, and protease inhibitor cocktail (Jiangsu KeyGEN BioTECH, Nanjing, China). Pierce BCA Protein Assay Kit (Jiangsu KeyGEN BioTECH, Nanjing, China) was used to determine the protein concentration. Anti-CD63 (A5271, ABclonal), anti-Alix (12422-1-AP, Proteintech), anti-CD81 (66866-1-Ig, Proteintech), anti-Calnexin (ab22595, Abcam), anti-STING (19851-1-AP, Proteintech), anti-Phospho-STING (Ser366) (85735, Cell Signaling Technology), anti-Phospho-STING (Ser365) (72971, Cell Signaling Technology), anti-IRF3 (4302, Cell Signaling Technology), anti-Phospho-IRF3 (Ser396) (29047, Cell Signaling Technology), anti-NF-kB p65 (A19653, ABclonal), anti-Phospho-NF-kB p65 (Ser536) (3303, Cell Signaling Technology), anti-Beta-Actin (4970, Cell Signaling Technology), anti-GAPDH (AF1186, Beyotime Biotechnology) and secondary antibodies (KGP1201, Jiangsu KeyGEN BioTECH, Nanjing, China) were used for western blot.
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3

NF-κB Signaling Pathway Analysis

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Aliquots containing 1 3 10 6 cells were washed with PBS and lysed in RIPA buffer (150 mmol/L NaCl, 1.0% NP-40, 0.1% SDS, 0.1% sodium deoxycholate, 5 mmol/L EDTA, and 10 mmol/L Tris-HCl, pH 7.4) containing protease inhibitors. Proteins were separated by using SDS-PAGE and transferred to membranes, and blots were probed with the following primary antibodies: anti-TNFAIP3, anti-phospho-IKKa/b Ser176/180, anti-IKKa, anti-phospho-IkBa Ser32, anti-IkBa, anti-phospho-NF-kB p65 Ser536, anti-NF-kB p65, anti-phospho-p38 mitogen-activated protein kinase (MAPK), anti-p38 MAPK, anti-SMC1 (all from Cell Signaling, Danvers, Mass), anti-glyceraldehyde-3-phosphate dehydrogenase, anti-CASP3 (GeneTex, Irvine, Calif), anti-green fluorescent protein (GFP; TaKaRa Clontech, Siga, Japan), or anti-b-actin (Sigma-Aldrich, St Louis, Mo). Primary antibodies were detected with horseradish peroxidase-conjugated anti-rabbit or anti-mouse secondary antibody (GE Healthcare, Little Chalfont, United Kingdom).
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