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7 protocols using cd56 pe cy7 hcd56

1

Multiparameter Flow Cytometry Staining

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Cells were stained with a viability dye (Live/Dead fixable near-IR dead cell stain kit, Invitrogen) and fluorochrome-labelled antibodies for 30 minutes at 4°C. The following antibodies were used: CD3-eFluor450 (OKT3, eBioscience), CD8-VioGreen (BW135/80, Miltenyi), γδTCR-FITC (5A6.E9, Invitrogen), CD161-PE and CD161-APC (191B8, Miltenyi), Vδ2-PerCP-Cy5.5 (B6, BioLegend), CD56-PE-Cy7 (HCD56, BioLegend), Vα7.2-APC and Vα7.2-PerCP-Cy5.5 (3C10, BioLegend), CCR7-FITC (G043H7), CD62L-PE (DREG-56, BioLegend). Data was acquired by a MACSQuant Analyzer 10 (Miltenyi).
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2

NK Cell Cytotoxicity Assay with Lymphoma Cells

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PBMCs were incubated with 1 ng/mL IL-15 overnight at a cell density of 2x106 cells/mL and then co-cultured with selinexor- or leptomycin B-treated lymphoma cell lines at an E:T ratio of 5:1 for 4 hours at 37°C. Immediately before co-culture, 0.17 µg/mL α-CD107a (LAMP)-eFluor660 (clone eBioH4A3, Invitrogen) was added to PBMCs. After 1-hour of co-culture, GolgiStop (per manufacturer recommendations, BD Biosciences) was added. Following 4-hours of incubation, cells were incubated with 10% human serum at 4°C for 15 minutes before surface staining with antibodies against CD3-PerCP (clone UCHT1, Biolegend), CD56-PE/Cy7 (HCD56, Biolegend) and NKG2A-FITC (REA110, Miltenyi Biotech) in FACS buffer (PBS, BSA 1%, Sodium Azide 0.05%) at 4°C for 30 minutes. Cells were then permeabilized and fixed with BD Cytofix/Cytoperm (BD Biosciences) per manufacturer recommendations and stained with anti-IFNγ-BV421 (BD Biosciences) at 4°C for 30 minutes. Cells were then washed twice with 1X Perm/Wash buffer and immediately assessed by flow cytometry using a BD FACS Aria II (BD Biosciences) and FACSDiva software (BD Biosciences) as above.
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3

Comprehensive Immune Profiling by Flow Cytometry

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We used flow cytometry with hierarchical gating strategies adapted from established guidelines for analysis of human PBMCs and suitable for cryopreserved samples (18 (link), 19 (link)). Our panel offered survey phenotyping of T cell subsets, including Tregs, as well as B cells and NK cells (see Figure S1 in Supplementary Material). The following fluorochrome-conjugated monoclonal antibodies were used: CD3 BV605 (OKT3, Biolegend), CD4 Alexa 700 (RPA-T4, Biolegend), CD8α V500 (SK1, BD Biosciences), CCR6 PE-Cy7 (G034E3, Biolegend), CXCR3 PE (G025H7, Biolegend), CD127 APC (A019D5, Biolegend), CD25 BV421 (M-A251, Biolegend), CD19 V500 (HIB19, BD Biosciences), CD56 PE-Cy7 (HCD56, Biolegend), CD20 PE (2H7, BD Biosciences), CD14 V450 (MFP9, BD Biosciences), and CD16 FITC (3G8, BD Biosciences). We also used the commercially available IOTest® Beta Mark Kit (Beckman Coulter) for quantitative determination of the human TCR Vβ repertoire in CD4+ and CD8+ cells [nomenclature from Ref. (20 (link))].
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4

Multicolor Flow Cytometry Assay

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The following mAbs were used for the detection of surface markers: anti-CD3 APC-Cy7 (clone: UCHT1), CD14 APC-Cy7 (HCD14), CD16 BV510 (3G8), CD19 APC-Cy7 (HIB19) and CD56 PE-Cy7 (HCD56), all IgG1 isotypes from Biolegend (San Diego, CA, USA). CD57 VioBlue (TB03, IgM isotype) and CD159C PE (REA 205, IgG1 isotype) were purchased from Miltenyi Biotech, Bergisch Gladbach, Germany. CD158a (KIR2DL1) FITC (HP-3E4, IgM isotype) and CD158b (KIR2DL2/DL3) FITC (CH-L, IgG2b isotype) were purchased from BD Biosciences, San Jose, CA, USA.
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5

Immunophenotyping of T Cell Subsets

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Cells were stained with a viability dye (LIVE/DEAD Fixable Near-IR Dead Cell Stain Kit; Invitrogen) and fluorochrome-labeled Abs for 30 min at 4°C. The following Abs were used: CD3–eFluor 450 (OKT3; eBioscience), CD8-VioGreen (BW135/80; Miltenyi Biotec), γδTCR-FITC (5A6.E9; Invitrogen), CD161-PE and CD161-APC (191B8; Miltenyi Biotec), Vδ2-PerCP-Cy5.5 (B6; BioLegend), CD56–PE-Cy7 (HCD56; BioLegend), Vα7.2-APC and Vα7.2-PerCP-Cy5.5 (3C10; BioLegend), CCR7-FITC (G043H7), and CD62L-PE (DREG-56; BioLegend). Data were acquired by a MACSQuant Analyzer 10 (Miltenyi Biotec).
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6

CLL Cell Cytotoxicity Assay with IL-15-Activated PBMC

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Healthy donor PBMC were incubated with 1 ng/mL IL-15 overnight and subsequently co-cultured with selinexor- or leptomycin B-treated CLL cells at an E:T ratio of 1:1 for 4 h at 37 °C. 0.17 µg/mL α-CD107a-eFluor660 (eBioH4A3, Invitrogen) was added to PBMCs and golgiStop (BD Biosciences) added after 1 h. PBMC were then stained with the following antibodies in FACS buffer (PBS, BSA 1%, Sodium Azide 0.05%) at 4 °C for 30 min: CD3-PerCP (UCHT1, Biolegend), CD56-PE/Cy7 (hCD56, Biolegend) and NKG2A-FITC (REA110, Miltenyi Biotech). Cells were then permeabilized and fixed with BD Cytofix/Cytoperm (BD Biosciences), stained with anti-IFNγ-PE (B27, Biolegend) and assessed using a BD FACS Aria II.
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7

Lymphocyte Subset Analysis by Flow Cytometry

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PBMCs were FcR-blocked with 10% normal goat serum (Life Technologies, Gaithersburg, MD), then stained with antibodies CD4-APC-H7 (clone RPA-T4), CD8-APC-H7 (SK1), CD28-APC (CD28.2, all BD Biosciences, Franklin Lakes, NJ), and CD56-PE-Cy7 (HCD56, BioLegend, San Diego, CA) for lineage analysis, and CD69-PerCP-Cy5.5 (clone FN50, BD Biosciences), an activation marker. Cell death was measured with trypan blue exclusion and apoptosis with Apotracker (BioLegend).
Lymphocytes were gated using FSC and SSC using LSRFortessa 4–15 or 4–15 HTS flow cytometers (BD Biosciences) (eFigure 2, links.lww.com/NXI/A787). A total of 10,000 lymphocytes were run for each condition, so absolute numbers parallel percentages within the lymphocyte population. Lymphocyte subset frequency, median fluorescence intensity (MFI), and multiparameter compensation values were calculated with FlowJo software.28 (link) Clinical laboratory testing quantitated total white blood cells and absolute lymphocyte count, which paralleled flow cytometry classified lymphocytes.
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