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3 protocols using mrna specific primers

1

Quantifying Inflammatory Markers in HPMECs

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RNA was extracted from HPMECs by Trizol Reagent (15596026, Thermo Fisher Scientific, USA) according to the manufacturer's instructions. The RNA expression of IL-1β, IL-6, and E-selectin was detected by RT-PCR with mRNA-specific primers (Sangon Biotech, CN). One microgram of RNA was reverse-transcribed into cDNA using the Reverse Transcription System (4374966, Thermo Fisher Scientific, USA). RT-PCR was performed with SYBR Green Supermix with ROX (A25742, Thermo Fisher Scientific, UK) using a PCR detection system (7500fast, Applied Biosystems, CA). Ct values were used to quantify the mRNA levels, and the Ct value of each target mRNA was standardized to the Ct value of β-actin using the 2-ΔΔCt method. The primer pairs used are listed in Table 1.
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2

Isolation and Analysis of sus scrofa TFF3 mRNA

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Total RNA from sus scrofa spleen tissue (preserved in our laboratory) was isolated using a TRIzol® reagent kit (Takara Bio, Inc.) according to the manufacturer's instructions. cDNA synthesis was performed using a PrimeScript Reverse Transcriptase kit (Takara Bio, Inc.). Primers for the sus scrofa TFF3 gene were designed using Primer v.5.0 software (Sangon Biotech. Co. Ltd.), according to the gene sequence in the GenBank database (accession no. NM_001243483). mRNA specific primers (Sangon Biotech Co, Ltd.) were: TFF3 forward, 5′-GCATGGAGGCCAGGATGT-3′ and reverse, 5′-CGGTTAGAAGGTGCATTCT-3′. The PCR program to amplify the TFF3 gene from cDNA was 95°C for 5 min, followed by 35 cycles of 95°C for 30 sec, 55°C for 20 sec and 72°C for 30 sec with a final extension step at 72°C for 10 min. PCR products were separated by 2% agarose gel electrophoresis. Purified PCR fragments were retrieved using a PCR gel recovery kit (Takara Bio Inc.). Bands were visualized using the GelDoc XR+ (Bio-Rad Laboratories, Inc.) gel imaging system through nucleic acid staining. Densitometric analysis was performed using Gel-Pro Analyzer 4.0 software (Media Cybernetics, Inc.).
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3

Quantification of Inflammatory Cytokines in Liver

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Total RNA was extracted from liver tissues with TRIzol Reagent (15596026, Thermo Fisher Scientific, California, United States) according to the manufacturer’s specifications. Reverse transcription was completed by a Prime-Script RT Master Mix transcription kit (RR036A, TaKaRa, Tokyo, Japan). mRNA-specific primers (Sangon Biotech, China) were used to detect the RNA expression of IL-6, IL-1β and TNF-α. A 7500 Fast system (Applied Biosystems, United States) was used for qRT-PCR analysis. The results were analyzed using the 2−ΔΔCt method, and GAPDH was amplified as an internal standard. The primer sequences are listed in Supplementary Table S1.
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