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J 715 circular dichroism spectrometer

Manufactured by Jasco
Sourced in Japan, United States

The J-715 circular dichroism spectrometer is a laboratory instrument designed to measure the circular dichroism (CD) of samples. Circular dichroism is the difference in absorption of left-handed and right-handed circularly polarized light by a substance. The J-715 spectrometer provides accurate and reliable measurements of the CD spectrum of a wide range of samples, including proteins, nucleic acids, and small molecules.

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7 protocols using j 715 circular dichroism spectrometer

1

Circular Dichroism Spectroscopy of Protein Samples

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Measurements were conducted on a JASCO J-715 Circular Dichroism Spectrometer (Jasco Inc., Easton, MD) using a 0.1 mm pathlength cell. Spectra were recorded between 185 and 260 nm in an interval scan mode with 0.2 nm resolution and an average time of 1 sec. Scan speed was 50 nm/min. Spectra of the low concentration samples (10-45 mM) were recorded after 10 days of incubation. The 60 mM sample was filled into the capillary directly after dissolution and its structure evolution was monitored over 4 days. Due to the high viscosity of the 75 mM sample it was not possible to fill the sample into a measurement cell. The final spectra were corrected for background by subtracting the corresponding buffer spectra obtained under identical conditions. Data processing and analysis were performed with CDtool [52 (link)] and Igor Pro (Version 6.22A, WaveMetrics Inc., USA). The threshold of the high tension (HT) voltage signal was set to 600 Volts. Parts of the CD spectra exceeding this threshold are marked by dotted lines.
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2

Circular Dichroism Analysis of SOD Proteins

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Circular dichroism was measured on a Jasco J-715 circular dichroism spectrometer (Japan). First, 0.14 mg/mL SODBSn5 and 0.4 mg/mL other proteins including SODNG2215, SODANG2215 SODABSn5 and SODr in 20 mM potassium phosphate buffer (pH 8.0) was placed in a 1 mm quartz cell. All spectra were recorded at a scanning rate of 100 nm/min with 0.1 nm wavelength steps from 190 to 250 nm and three accumulations.
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3

Analytical Techniques for Natural Product Characterization

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Optical rotation measurements were made using a Rudolph Research Autopol III automatic polarimeter. NMR spectra were obtained on Varian NMR spectrometers (400 and 500 MHz for 1H and 100 and 125 MHz for 13C). HRESIMS data were obtained on an Agilent 6538 high-mass-resolution QTOF mass spectrometer. ECD spectra were obtained on a JASCO J-715 circular dichroism spectrometer. Vacuum column chromatography was performed over silica gel (VWR, 40–60 μm, 6 Å) and HP20ss gel (Sorbtech). The preparative HPLC system was equipped with Shimadzu SCL-10A VP pumps and a system controller using a Gemini 5 μm C18 column (210 Å, 250 × 21.2 mm) with a flow rate of 10 mL/min. The semipreparative HPLC were conducted on a Waters system (1525 binary pumps and Waters 2998 photodiode array detectors) using a Gemini 5 μm C18 (110 Å, 250 × 10 mm), F5 (110 Å, 250 × 10 mm), or biphenyl column (110 Å, 250 × 10 mm) with a flow rate of 4 mL/min. All solvents used were of ACS grade or better.
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4

Structural Characterization of a Compound

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Optical rotatory dispersions were acquired using a JASCO P-2000 spectrometer. Optical rotations were obtained on an Optical Activity AA-55 series polarimeter. UV data were performed on a Perkin-Elmer model 241 spectrophotometer in MeOH. Electronic circular dichroism spectra were measured using a JASCO J-715 circular dichroism spectrometer. IR spectra were determined using KBr pellets with a Nicolet NEXUS 470 spectrophotometer. Vibrational circular dichroism spectra were taken on a BioTools ChiralIR-2X spectrophotometer. 1D and 2D NMR data (600 MHz for 1H and 150 MHz for 13C) were acquired on Bruker Avance-III 600 MHz NMR spectrometer with TMS as an internal standard. High-resolution mass data were obtained from a Thermo Scientific LTQ Orbitrap XL spectrometer. HPLC analysis and semi-preparation was performed on a Shimadzu LC-20AT system with a SPD-M20A photodiode array detector, using a Waters RP-18 (XBridge OBD, 5 μm, 10 × 250 mm) and a Waters normal phase (ViridisTM Silica 2-Ethylpyridine, 5 μm, 10 × 250 mm) columns. Column chromatography was performed on Silica gel 200–300 mesh (Qingdao Marine Chemical Factory), and Sephadex LH-20 (18–110 μm, Pharmacia Fine Chemical Co., Ltd., Sweden).
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5

Circular Dichroism Spectroscopy Protocol

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The sample preparation for the circular
dichroism (CD) experiment was similar to that for Bis-ANS binding
assays. CD measurements were conducted after 0, 6, 18, 26, and 45
h incubation using a J-715 circular dichroism spectrometer (JASCO,
USA). Spectra were recorded from 200 to 250 nm using a 1 mm path length
quartz cell at 25 °C (1 nm intervals; scan speed 50 nm/min).
The data were averaged from 10 scans and subtracted from the background
spectrum.
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6

Circular Dichroism Spectroscopy Analysis

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1 mg mL−1 of protein was analysed using far UV spectra (190–270 nm) measured by a Jasco J715 Circular Dichroism Spectrometer (Jasco Inc.). Spectra were taken at 20 °C. 4 readings were taken for each measurement and averaged by the software provided.
For spectra analysis the following Eq. 1 was used. θMRW=MW(n1)×θl×c×10 where θMRW is the mean residue elipticity, MW is the molecular weight of the protein, n is the number of amino acids, θ is the degrees in elipticity, l is the path length and c is the concentration.
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7

Circular Dichroism Protein Analysis

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1 mgmL -1 of protein was analysed using far UV spectra (190nm-270nm) measured by a Jasco J715 Circular Dichroism Spectrometer (Jasco Inc.). Spectra were taken at 20˚C. 4 readings were taken for each measurement and averaged by the software provided. For spectra analysis the following equation was used.
[𝜃] $%&' )* (,-.) × 1
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