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91 protocols using axiovert 25 microscope

1

Lipofuscin Accumulation and Pumping Rate Analysis in Aging Worms

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About 10 worms of each condition were analyzed at the early stage (from day 1 to day 4) and during aging (from day 9 to day 11) of adulthood. Pumping rate was measured under Zeiss Axiovert 25 microscope by counting the number of grinder contractions of 10 animals for each treatment, during a period of 30 s, as described in (Guantario et al., 2018 (link)). To analyze the auto-fluorescence of lipofuscin granules, 10 worms per condition at different stages (day 2, 3, 5 and 11) were washed three times with M9 buffer and observed by Zeiss Axiovert 25 microscope under DAPI filter. Images were taken at the time of exposure of 0.2 s and scale bars were inserted by Zeiss ZEN Microscopy Software 2011. Fluorescence was analyzed using ImageJ software. Aging analyses were performed in triplicate.
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2

Evaluating ZnO Nanoparticles on Candida albicans

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Vegetative cells of C. albicans was exposed for 6 h or 12 h to 10, 50, 100, and 250 µg/mL ZNGs, at 30 °C shaking gently. After that, the cells were washed twice with PBS and then stained with 1 µM SYTOX green (Thermo Fisher Scientific; Waltham, MA, USA) for 15 min at room temperature. Epifluorescence microscopy was carried out with a Zeiss AxioVert 25 microscope (Carl Zeiss, Oberkochen, Germany) fitted with a ×100 immersion objective and a standard filter set. Percentage of fluorescent cell was calculating relative to the total cells per image.
For biofilm staining, after the incubation for 24 h or 48 h, the wells were washed once with PBS and then stained with 1 µM SYTOX green for 15 min at room temperature. Finally, the plates were washed once with PBs and were observed to Zeiss AxioVert 25 microscope with the GFP filter (Carl Zeiss, Oberkochen, Germany).
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3

Aging and Locomotion Analysis in Nematodes

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For the ageing markers, 10 worms, at the stage of 10 days of adulthood, were analysed for each condition. For the pharyngeal pumping rate, grinder contractions were analysed under a Zeiss Axiovert 25 microscope and measured within 30 s. Their locomotion capability was analysed by placing nematodes in 10 μL of M9 buffer and counting the body bending after 30 s.
For lipofuscin accumulation, the nematodes were washed in M9 buffer and placed onto a 3% agar pad containing 20 mM of sodium azide. Then, worms were observed under a Zeiss Axiovert 25 microscope and the median fluorescence intensity (MFI) was analysed using ImageJ software 1.52 t, measuring the ratio of pixels per area of the worm. Experiments were performed in triplicate.
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4

Cell Culture Imaging and Enumeration

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At 72 h post-transfection the cell cultures were photographed using a Zeiss Axiovert 25 microscope at 5x magnification (Carl Zeiss, Jena, Germany). Following trypsination, cells were counted using Beckman Coulter Z2 (Beckman Coulter, Inc., Fullerton, CA, USA).
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5

Multicellular Spheroid Invasion Assay

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Multicellular spheroids were generated by seeding LLC cells (1 × 103) alone or with BM-MSCs (5 × 102) in each well of a nonadherent, round-bottomed plate (Greiner BioOne) in DMEM containing 2% FBS and 0.24% high-viscosity methyl cellulose (Sigma Aldrich). After 24 hours of culture, spheroids (maximum 8/well) were collected, embedded in type I collagen gels (1.25 mg/ml; BD Biosciences) in 24-well plates, and maintained in 2% FBS-DMEM at 37°C for 24 hours. In some assays, collagen gels (1.25 mg/ml, BD Biosciences) were preincubated before spheroid embedding with the following compounds: a neutralizing anti-AREG antibody (3 μg/ml, R&D Systems), a normal goat IgG control (3μg/ml, R&D Systems), an EGFR inhibitor, AG1478 (20 μM, Calbiochem), and a TACE inhibitor, TAPI-0 (10 μM, Calbiochem) Cells were examined under a Zeiss Axiovert 25 microscope equipped with an Axiocam Zeiss camera and KS 400 Kontron image-analysis software (Carl Zeiss Microscopy, Zaventem, Belgium).
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6

Invasion Assay for Spheroid Cells

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The invasion test was performed as described by Martínez-Rodríguez et al. [84 (link)] with some modifications. Briefly, 1.2 × 103 cells were seeded per well, and after the formation of the spheroid, it was treated with 800 and 1000 μg/mL of CSE and 9.94 μg/mL of cisplatin for 24 h. Subsequently, 100 μL of Matrigel® Matrix (Corning®) per well and then RPMI medium was added. The invasion was determined using an inverted Zeiss Axiovert 25 microscope (Carl Zeiss) and ImageJ software and calculated by measuring the area and perimeter between the spheroids’ edge and the invading cells’ edge.
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7

Optimizing Cell Seeding Density for Rapid Growth

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Various cell concentrations were tested to determine an optimum inoculation density that would result in the fastest growth rate within 48 hr of seeding. Bioreactors were inoculated at concentrations of 20, 30, and 60 cells/bead. Cell counts and images were taken at 12 hr, 24 hr, then every 24 hr following for a total of 4 days. For each condition, two bioreactors were inoculated, and two 3-mL samples were taken from each bioreactor at each time point to count. Each 3-mL sample was put into a 15-mL conical tube, and the microcarriers were settled for 5 min. The supernatant was removed and the microcarriers were washed three times with 1 mL of Ca+/Mg+ free PBS with 1% Anti-Anti solution as described previously. The cells were then re-suspended in 1 mL of PBS, and two 100-μL samples were taken from each conical tube to be counted with the NucleoCounter. Images of the cells on the microcarriers were taken with a Zeiss Axiovert 25 microscope (Carl Zeiss). A 0.5-mL sample was removed from each bioreactor using a 5-mL pipette and added to a 6-well plate with 1.5 mL of PBS. Twenty microliters of 0.5% crystal violet (Sigma Aldrich) in methanol was added to each well and left to sit for 5 min at room temperature. Images were taken at 10× magnification with the filter set to phase 0, as this gives a flatter image that refracts less light making the cells easier to see.8 (link)
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8

Scratch Wound Closure Assay

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Transfected or untransfected AGSGR cells were grown as confluent monolayers in 24-well plates before a cell-free region was created using a 2-μL pipette tip. Cells were washed twice in PBS, then washed twice in serum-free media before the treatment was applied. Whole cells that had migrated into the denuded region were counted and scratch wound width was measured using a graticule at 0 and 8 hours after treatment. Representative images were taken at these times using a Zeiss Axiovert 25 microscope (Carl Zeiss Microscopy).
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9

Measuring Aggregate Size in Cell Cultures

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An aggregate was defined as a group of cells >40 μm in diameter. For both bioreactor and static culture conditions, the aggregate diameter was measured for 60 aggregates (n = 20 per animal, 3 animals for each condition) at the end of each serial passage. Aggregate size was determined by taking multiple 1.0‐ml samples to be imaged using a Zeiss Axiovert 25 microscope (Carl Zeiss Microscopy, Thornwood, NY, http://www.zeiss.com).
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10

Spheroid Size Determination by Microscopy

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Images of spheroids were generated using a Zeiss Axiovert 25 microscope (5 × objective; Carl Zeiss GmbH, Oberkochen, Germany) in combination with a Canon Powershot camera (zoom factor: 8.9 × ; Canon, Inc., Tokyo, Japan). Spheroid size was determined by ImageJ (set scale: 2430 pixel/1000 μm, elliptic selection), using the diameter of the assay plate (1 mm) as calibrator.
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