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15 protocols using anti cd3e

1

Isolation and Stimulation of Murine B Cells

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Total B cells were isolated from RBC-lysed splenocyte suspensions by positive selection using Miltenyi Biotec MACS LS columns and CD45R (B220) microbeads. B220+ or B220 splenocytes were cultured at a final density of 1–2 × 105 cells/mL in complete R10 (RPMI media with 10% FCS plus non-essential amino acids, 1 mM sodium pyruvate and 50 µM 2-β-mercaptoethanol, 20 mM hepes, 2mM L-glutamine, 10units/mL penicillin, 10 µg/mL streptomycin and 20 µg/ml neomycin) at 37 °C, 5% CO2. For RNA extraction, cells were washed with PBS after 24 h culture and pelleted for later RNA extraction as described below. For proliferation analysis, 106–107 B220+ or B220 cells were labeled with 2.5 µM CellTraceViolet (CTV) dye before culturing for 72–96 h prior to analysis by flow cytometry as below. The following stimuli were prepared as indicated in complete R10: anti-IgM, µ-chain specific (Jackson ImmunoResearch; 115-005-075), LPS from Salmonella species (Sigma Aldrich; L7770), HEL (Sigma Aldrich; L6876-5G), anti-CD40 (Biolegend; 102908), anti-CD3e (Biolegend; 100331), anti-CD28 (Biolegend; 122004) and recombinant mouse IL-4 (Biolegend; 715004).
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2

Isolation and Characterization of Immune Cells from Spinal Cord

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Single-cell suspensions from spinal cords were obtained via mechanical dissociation on a cell strainer. Immune cells were separated over a two-phase Percoll density gradient by centrifugation. Blood was collected by cardiac puncture in EDTA (80 mM), and single-cell suspension was obtained by centrifugation over lymphocyte separation medium (PAA Laboratories). Staining of CD3+CD4+ T cells, CD3+CD8+ T cells, and CD11b+CD45+ cells (microglia/macrophages) was performed using the following antibodies at a 1:200 dilution: anti-CD3e (BioLegend, 100312; clone 145-2C11), anti-CD4 (Becton Dickinson, 553730; clone GK 1.5), anti-CD8 (Becton Dickinson, 100706; clone 53-6.7), anti-CD11b (BioLegend, 101207; clone M1/70), and anti-CD45.2 (BioLegend, 109814; clone 104). The addition of CaliBRITE APC (allophycocyanin) beads (BD) allowed for cell quantification. Flow cytometry was performed using a CytoFLEX S operated by CytExpert v2.4 software (Beckman Coulter v2.3). Small debris was removed with preliminary FSC/SSC (forward scatter/side scatter) gating. Single living cells were obtained by doublet exclusion. Analyzed cells were defined by marker expression, and positively and negatively stained populations were defined using isotype controls if necessary.
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3

Evaluating Glutaminase Inhibitor and Anti-PD-L1 in T Cell-Ovarian Cancer Co-culture

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Similar to the coculture system reported by Xu et al. [20 (link)], we stimulated PBMCs with anti-CD3e (2.5 μg/mL, #300432, BioLegend, San Diego, CA, USA), anti-CD28 (1.25 μg/mL) (#302923, BioLegend) and ovarian cancer cell lysate. Briefly, PBMCs were plated at a density of 2 × 106 per well in six-well plates and stimulated with anti-CD3e, anti-CD28, as well as ovarian cancer cell lysate for 3 days. Then CD8+ T cells were purified using RosetteSep human CD8+ T cell Enrichment Cocktail. For the direct co-culture system, activated CD8+ T cells were co-cultured with ovarian cancer cells in 12-well plates at a ratio of 5:1 [21 (link),22 (link)] in the presence of different doses of glutaminase inhibitor 968, with or without anti-PD-L1 antibody. IgG was used as a control. After 24 h, the CD8+ T cells were removed with phosphate-buffered saline (PBS), and the attached cancer cells were collected and subjected to flow cytometry. For the indirect co-culture system, transwell cell culture chambers (0.4 μm, CLS3397, Corning, Tewksbury, MA, USA) were used to separate CD8+ T cells and cancer cells. CD8+ T cells were seeded into the upper chamber, and cancer cells were seeded into the lower chamber at a ratio of 5:1. After exposure to different concentrations of 968 for 24 h, the cancer cells were collected for flow cytometry analysis.
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4

Multiparameter Immune Cell Profiling

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Anti-mouse ABs: anti-CD3e (clone: 145-2C11), anti-CD34 (clone: HM34), anti-CD45R (clone: RA3-6B2), anti-CD117 (c-KIT, clone: 2B8), anti-CD182 (CXCR2, clone: SA044G4), anti-CD184 (CXCR4, clone: L276F12), anti-Ly-6A/E (Sca-1, clone: D7), anti-Ki-67 (clone: 11F6), anti-Ly-6G (clone: 1A8), anti-NK-1.1 (clone: PK1), anti-mouse/human-CD11b (clone: M1/70) all from BioLegend (San Diego, CA, USA), and anti-CD16/32 (clone: 93) and anti-CD62L (clone: MEL-14) (both from eBioscience, Thermo Fisher Scientific, Waltham, MA, USA). Anti-human ABs: anti-CD66b (clone: 80H3, Beckman Coulter, Brea, CA, USA), and anti-CD71 (clone: M-A712, BD Biosciences, Franklin Lakes, NJ, USA). Viability dye eFluor780 and eFluor506 (eBioscience, Thermo Fisher Scientific, Waltham, MA, USA) or DAPI (BioLegend, San Diego, CA, USA) were used to determine viable cells.
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5

Cytokine Profiling of CNS-infiltrating T cells

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To assess cytokine production on T cells infiltrating the CNS, immunized mice were sacrificed at peak disease and mononuclear cells from brain tissues were isolated as previously described (Garcia et al., 2013 (link)). T cells were stimulated for 4 h at 37°C and 5% CO2 under the following conditions: cRMPI [RPMI 1640, Gibco; 10% Fetal bovine serum, Atlanta Biologicals; 1% Pen-Strep (Gibco), anti-CD3e (BioLegend), anti-CD28 (BD Pharmingen) and GolgiStop (BD Biosciences)]. For intracellular cytokine staining, the following reagents were used: Mouse Fc block (clone 2.4G2, BD Pharmingen); fixation/permeabilization buffer (Invitrogen); perm/wash buffer (BD Biosciences); cell staining buffer (BioLegend) and the following antibody cocktail: TCR-b V450 (clone H57-597, BD Horizon), CD4-APC-Cy7 (clone RM4-5, BioLegend), CD8a-PerCP/Cy5.5 (clone 53-6.7, BD Pharmingen), IL-17-PE (clone TC11-18H10.1, BioLegend) and IFN-γ-APC (clone XMG1.2, BioLegend) Samples were acquired using an ImageStreamX-Imaging Flow Cytometer-ISX-MKII (EMD Millipore) at the Cell Analysis Core, UTSA. Data analysis was performed using IDEAS software version 6.2.
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6

Multi-tissue Single Cell Analysis

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Single cell suspensions were prepared from spleen, BM, or thymus, followed by red blood cell lysis (for spleen and BM only) (R7757; Sigma-Aldrich). The following antibodies were from BioLegend: anti-CD4 (clone GK1.5), anti-CD8 (clone 53-6.7), anti-CD11b (clone M1/70), anti-CD19 (clone 6D5), anti-CD48 (clone HM48-1), anti-CD150 (clone TC15-12F12.2), anti-Ly6C/G (Gr-1) (clone RB6-8C5), anti-B220 (clone RA3-6B2), anti-Ly6A/E (Sca-1) (clone D7), anti-Ter119 (clone TER-119), anti-CD41 (clone MWReg30), anti-CD105 (clone MJ7/18), anti-CD16/32 (clone 93), anti-CD43 (clone S11), anti-IgM (clone AF6-78), anti-CD93 (clone AA4.1), anti-CD44 (clone IM7), anti-cKit/CD117 (clone 2B8), and anti-Lineage, with an antibody cocktail containing the following: anti-CD3e (clone 17A2), CD4 (clone GK1.5), CD8 (clone 53-6.7), TCRβ (clone H57-597), TCRγδ (clone GL3), NK1.1 (clone PK136), CD11b (clone M1/70), CD11c (clone N418), Ter119 (clone TER-119), Gr-1 (clone RB6-8C5), B220 (clone RA3-6B2), and CD19 (clone 6D5). Dead cells were excluded with Zombie Aqua Fixable Viability Dye (BioLegend). Cells were analyzed using a BD LSRFortessa flow cytometer (Becton Dickinson) and data were analyzed with FlowJo (TreeStar/BD).
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7

Quantifying Hepatic CRIg, T Cells, and Neutrophils

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Liver sections were embedded in OCT compound. 5 μm frozen sections were then cut. To determine CRIg expression levels in controls and patients with alcoholic hepatitis, liver sections were stained with anti-huCRIg (1:500) (Genentech) and anti-CD68 (1:200) (Agilent Dako) primary antibodies. To determine CRIg expression levels in control- and ethanol-fed mice, liver sections were stained with anti-muCRIg (1:5,000) (Genentech) and anti-F4/80 (1:50) (Biolegend) primary antibodies. To determine T cell and neutrophil infiltration in all groups of ethanol-fed mice, liver sections were stained with anti-CD3e (1:300) (Biolegend) and anti-Ly6G (1:200) (Biolegend) primary antibodies. Representative pictures from both groups are shown. Five high-power fields of each sample were randomly selected for quantification using ImageJ and Qupath43 (link).
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8

Isolation and Activation of Murine CD4+ T Cells

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Naive CD4+ T helper cells were extracted from spleens of JaxJ mice, 8 weeks old males (Stem Cell Technologies #19765, CD8-CD11b-CD11c-CD19-CD24-CD25-CD44-CD45R-CD49b-TCRγ/δ-TER119-), according to the manufacturer’s protocol. Up to 4 spleens were pooled in each biological replicate. The cells were activated in 96-well round bottom plates that were coated with 3ul/ml anti-CD3e (BioLegend #100202) and 5ul/ml anti-CD28 (BioLegend #102102) for 4 hours at 32°C. 24 hours later cytokines were added (See S2 File, condition table). 72 hours after activation the cells were pelleted, resuspended in RLT buffer (Qiagen #79216), and stored at -80°C.
For the repeated screen, culturing was done in the same manner. The cells were then stained with PI and anti-CD4 eFluor 660 (eBioscience 50-0041-82, clone GK1.5) for 30 minutes in IMDM media. The cells were then FACS sorted to retain live CD4+ T cells, on average 5000 cells per well.
During Th0 conditions, it is possible for the cells to become somewhat Th1 polarized; we have looked at markers in the data but can neither confirm nor disprove that this is the case for these experiments.
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9

Wnt-10b Promoter Luciferase Assay

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Wnt‐10b‐promoter luciferase assays were performed as described.(40) A plasmid containing a −705 to +216 bp DNA sequence of the mouse Wnt‐10b‐promoter was kindly provided by Dr. D. J. Klemm (University of Colorado).(27) CD8+ T cells were purified from disaggregated spleen by negative selection EasySep Mouse CD8+ T cell Isolation Kit (StemCell Technologies Inc.) and transfected using an Amaxa Mouse T Cell Nucleofector Kit (Lonza, Basel, Switzerland) with 3.6 μg of empty vector (pGL3‐basic) or Wnt‐10b‐reporter construct and 0.4 μg TK‐pRL Renilla transfection control vector. Twenty‐four hours after transfection cells were stimulated with plate‐bound anti‐CD3e (10 μg/mL) and soluble anti‐CD28 activating antibodies (25 μg/mL) from BioLegend (San Diego, CA, USA). PTX (100μM) and other activators and inhibitors of the cAMP/PKA/CREB pathway included: H89 a PKA inhibitor (25μM in dimethylsulfoxide [DMSO]); 666‐15 (1μM in DMSO) a CREB inhibitor, and the PDE inhibitor PTX (100μM in PBS), and apremilast (10μM in DMSO) a PDE4 inhibitor, all from R&D Systems, Minneapolis, MN, USA). After 6 hours, luciferase activity was quantified using a dual‐luciferase reporter assay kit (Promega BioSciences, San Luis Obispo, CA, USA) on a Turner BioSystems Inc. (Sunnyvale, CA, USA) luminometer and data normalized for Renilla expression.
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10

Isolation and Activation of Murine Lymphocytes

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Naïve lymphocytes (CD8+, CD4+, or CD4+CD25+) were isolated from single cell suspension of murine splenocytes using magnetic selection (Miltenyi). Purified lymphocytes were then activated using of 5 μg/mL plate bound antiCD3e (Biolegend), 2 μg/mL soluble CD28 (Biolegend) and 50U/mL IL-2 (Peprotech) for indicated times. Lymphocytes were cultured in RPMI (Life Technologies) with 10% fetal bovine serum, 55 μM 2-mercaptoethanol, 2 mM glutamine, penicillin, and streptomycin at 37°C and 5% CO2.
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