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15 protocols using bradford protein assay kit

1

Protein Expression Analysis of Cellular Extracts

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CFs were washed with PBS (0.1 mol/L, pH 7-7.4) three times, lysed in a lysis buffer for 30 min at 4 °C, and then scraped off using a cell scraper before being mixed with a one-quarter volume of 5× loading buffer. The cell protein mixture was then boiled in a 100 °C water bath and cooled to room temperature. The protein concentration was determined using a Bradford protein assay kit (Amresco, M173-KIT). Equal amounts of protein (50 µg) were separated on 10% SDS-polyacrylamide gels and transferred onto nitrocellulose membranes. The strips were blocked with 5% nonfat milk for 1 h at room temperature. The strips were then incubated overnight with primary antibodies against AAT1 (Sigma, AV48205, 1:500), collagen I (Abcam, ab254113, 1:500), collagen III (Abcam, ab7778, 1:500), α-SMA (Abcam, ab5694, 1:500), β-catenin (Abcam, ab6302, 1:500), p-P38 MAPK (Abcam, ab4822, 1:500), P38 MAPK (Abcam, ab170099, 1:500) and GAPDH (Abcam, ab181602, 1:2000) diluted in PBS with 0.05% Tween 20 at 4 °C. The strips were rinsed using PBS with 0.05% Tween 20 for 30 min, followed by incubation with secondary antibodies for 1 h at room temperature. All protein bands were detected using Amersham ECL Western blotting detection reagents (GE Healthcare, RPN2106) and analyzed with a biological electrophoresis image analysis system.
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2

Protein Isolation and Western Blot Analysis

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The protein obtained from the various experiments was isolated using 1 × cell lysis buffer (Cell Signaling, Danvers, MA, USA) and the concentration was determined with the Bradford Protein Assay Kit (AMRESCO, Solon, OH, USA). Protein lysates were then investigated by Western blot analyses as previously described [39 (link),42 (link)]. The specific antibodies used in the current study were listed as follows: CP (abcam, Cambridge, UK), Fibrinogen, SOD and β-actin. The band intensity was quantified by using GeneTools software and the level of β-actin was performed as internal control.
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3

Quantitative Protein Analysis of Skin

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Western blot analysis was applied to perform and quantify the amount of protein. The protein obtained from the skin was isolated using 1× cell lysis buffer (Cell Signaling, Danvers, MA, USA) and the concentration was determined with the Bradford Protein Assay Kit (AMRESCO, Solon, OH, USA). The specific antibodies used in the current study were listed as follows: α-SMA (Santa Cruz, Dallas, TX, USA, sc-32251), COLA1 (Santa Cruz, sc-8784), CD68 (Santa Cruz, sc-20060) and GAPDH (Santa Cruz, sc-25778), N-cadherin (Epitomics, Burlingame, CA, USA, 2019-1), ZO-1 (Cell Signaling, 9782), phospho-ERK (Cell Signaling, 9101) and ERK (Cell Signaling, 4695), activin A (myBioSource, San Diego, CA, USA, MBS7103066 & MBS9201920), and CD163 (Bioss, Woburn, MA, USA, bs-2527R). The band intensity was quantified by using GeneTools software (Syngene, Cambridge, UK) and the level of GAPDH was performed as internal control [44 (link)]. All experiments were performed in biological triplicate to confirm the reproducibility.
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4

Investigating Antioxidant Defenses in UV-Irradiated HaCaT Cells

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HaCaT cells were pretreated with 200 μg/mL RBE and exposed to 100 mJ/cm2 UVB radiation. The protein derived from the treatment was isolated using 1x cell lysis buffer (Cell Signaling), and the concentration was measured using the Bradford Protein Assay Kit (AMRESCO). Protein lysates were evaluated with Western blot analyses as previously described [20 (link), 21 (link)]. Western blot analysis was performed using the specific antibodies: PARP, caspase-3 (DAKO), catalase (Bioss), Cu/ZnSOD (ABBIOTEC), GAPDH, MnSOD, Nrf2, HO-1, β-actin, phos-p38, p38, c-Jun, NFκBp65, and NFκBp50 (Santa Cruz). The levels of GAPDH or β-actin were used as the internal loading control. Densitometric analyses of scanned images were performed using GeneTools software (Syngene, UK).
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5

Vimentin Expression in Hepatic Fibrosis

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To reveal the clinicopathological significance and relevance of vimentin expression in hepatic fibrosis, we have applied a separate cohort of 55 subjects (22 controls and 33 patients with liver fibrosis) under approval of Institutional Review Board, Chang Gung Memorial Hospital, Taiwan, plasma samples were retrospectively retrieved from the serum bank, Liver Research Center, Chang Gung Memorial Hospital for a study attempting to correlated biochemistry, tissue histology, and harmonic microscopy characteristics for liver fibrosis in hepatitis B patients. All patients included had previously received liver biopsy for evaluation of hepatitis activities and liver fibrosis which is classified by “ISHAK” score [24 (link)]. The protein amount was determined and normalized by using the Bradford Protein Assay Kit (AMRESCO, Solon, OH, USA)). Western blotting assays were conducted and quantified with GeneTools Image Software (version 4.03, Syngene). All experiments were technically repeated three times.
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6

Protein Quantification in G. columna

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The G.columna specimens were sonicated, and protein concentrations were measured using a Bradford protein assay kit (Amresco, Solon, OH, USA), with bovine serum albumin serving as the protein standard.
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7

Protein Quantification of Briareum violacea

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Briareum violacea tissue was first sonicated, and protein quality was measured using the Bradford protein assay kit from Amresco, Solon, OH, USA, using bovine serum albumin as a standard.
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8

Ubiquitination Assay for Protein Analysis

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The protein was isolated using cell lysis buffer (Cell Signaling, Beverly, MA, USA) and the concentrations were measured using the Bradford Protein Assay Kit (AMRESCO, Radnor, PA, USA). Protein lysates were prepared and Western blot analyses were performed as described previously [48 (link)]. For ubiquitination assay, cells were washed three times and then lysed with lysis buffer for 30 min. The cell lysate was centrifuged for 10 min at 12,000 rpm and the rest of homogenates were incubated with ubiquitin antibodies overnight at 4 °C. Protein A/G plus agarose beads (Santa Cruz) were added for another 2 h. The immunoprecipitation beads were washed with cold PBS five times, followed by Western blotting analysis. The levels of expression of β-actin and GAPDH were used as a gel loading control. Densitometric analyses of scanned immunoblotting images were performed using GeneTools software (Syngene version 6.05, Cambridge, UK). Results shown are representative of three separate experiments.
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9

Comprehensive Biochemical Analysis of G. columna

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After the experiment, the G. columna tissues were homogenized and sonicated, and the protein concentration was tested using the Bradford protein assay kit (Amresco, Solon, OH, USA), with bovine serum albumin serving as the protein standard. For fat content analysis according to standard methods [34 ], lipids were extracted from G. columna by using hexane; subsamples were then transferred to test tubes and evaporated to dryness. The total lipid weight was determined (±0.0001 g), and the derived weight values were converted to micrograms (1 g = 1 × 10−6 µg). We calculated each lipid with the following formula: Lipid=WiWoS×100
where Wo represents the constant weight of the aluminum cup (g), Wi represents the weight of the extracted oil contained in the aluminum cup (g), and S represents the sample weight (g). Carbohydrates were measured using the method proposed by Bishop [35 ] and Tietz [36 ], with glucose serving as reference material. Absorption values of 505–660 nm were used to determine glucose content. The formula for glucose content derivation is expressed as follows: glucose(µgmg)=A(Samplewithcolorimetrictestsample)A(Standardtube)×Glucosestandardconcentration(µgmg)
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10

Quantitative Protein Analysis via Western Blot

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Western blot analysis was applied to perform and quantify the amount of protein. The protein obtained from the skin was isolated using 1× cell lysis buffer (Cell Signaling) and the concentration was determined with the Bradford Protein Assay Kit (AMRESCO). The specific antibodies used in the current study were listed as follows: PDIA3, Nucleophosmin, ER, HER2, ZO-1, N-cadherin (Cell Signaling), GAPDH, PRX2, cathepsin D (Santa Cruz), and β-actin (Abcam, Cambridge, UK). The band intensity was quantified by using GeneTools software (Syngene, Cambridge, UK) and the level of GAPDH or β-actin was performed as internal control [34 (link),35 (link)]. All experiments were performed in biological triplicate to confirm the reproducibility.
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