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36 protocols using heracell 240i

1

Caco-2 Cell Line Culture and Passaging

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The human colorectal adenocarcinoma cell line Caco-2 (ATCC; HTB-37; DSMZ; ATCC169, ECACC09042001, ECACC; 86010202, Beijing, China) was used in this study. The culture fluid was aspirated from the cell culture flask and allowed to stand in a CO2 cell incubator (HERAcell 240i; Thermo Fisher Scientific; Waltham, MA, USA); remaining medium in the bottle was aspirated, and phosphate-buffered saline (PBS; Solarbio Technology Co., Ltd., Beijing, China) was used to wash the cell surface before adding 2 mL 0.25% trypsin-EDTA (Lot no: 2186970; Gibco, Grand Island, NY, USA) to digest the cells for 2–4 min after aspiration. The cell status was observed by inverted microscope (Caikang Optical; Shanghai, China) before adding MEM/EBSS-10 medium (Lot No: AG29584972; Cytiva, Marlborough, MA, USA) and fetal bovine serum (FBS, Lot No: 1907301; v/v:90/10) to stop the intestinal digestion. Thereafter, the cells were digested in a 100 mm cell culture dish until the cells adhered to the wall and reached a confluence of approximately 80%. This process was three times repeated, and the passaging ratio was 1:3.
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2

Cytotoxicity Assay for AM404 Treatment

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Cytotoxicity assay was performed using CellTox™ Green Cytotoxicity assay kit (Promega, Mannheim, Germany). Briefly, cells were cultured in 96-well plates at the density of 25 × 103 cells/well in DMEM medium containing 10% fetal calf serum (Biochrom AG, Berlin, Germany) and antibiotics (40 U/mL penicillin and 40 μg/mL streptomycin, both from PAA Laboratories, Linz, Austria). Cells were pre-treated with different concentrations of AM404 (0.1–10 μM) or DMSO 0.1% for 30 min. Thereafter, cells were incubated with or without LPS for the next 24 h. Ethanol (10% end conc., Sigma-Aldrich, Taufkirchen, Germany) was used as positive control to induce the cell death. After incubation (10% CO2 at 37 °C - Heracell 240i, Thermo Scientific), 100 μl of CellTox™ Green reagent were added in each well. The plate was mixed for 1 min and incubated for 15 min at room temperature, and the fluorescence was measured at 490 nmEx/530 nmEm using a Modulus™ II Microplate Multimode Reader (Turner BioSystems, USA).
The principle of the assay is to evaluate the alterations in the membrane integrity, using the cyanine dye. The dye binds in the dead-cell DNA and enhanced the fluorescent property, which is excluded from viable cells. The fluorescence intensity values obtained were normalized and presented as the percentage of untreated controls.
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3

Isolation of Mouse Pre-implantation Embryos

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To obtain pre-implantation embryos, female mice were superovulated by intraperitoneal injection of 5 or 7.5 international units (IU) of pregnant mare’s serum gonadotropin (Intervet, Intergonan) followed by 5 or 7.5 IU of human chorionic gonadotropin (hCG; Intervet, Ovogest 1500) 48 hours later. Hormone injection dosage was batch dependent and determined by LAR services. Superovulated females were mated with male mice directly after hCG injection. Embryos were flushed from dissected oviducts and uteri of female mice after super-ovulation and mating with male mice. Embryos were flushed from dissected oviducts and uteri at 48, 72, 78, 84, 96 and 108 hours post-hCG using KSOMaa with Hepes (Zenith Biotech, ZEHP-060). After flushing, embryos were washed in KSOMaa with Hepes, transferred to 10μL drops of KSOMaa (Zenith Biotech, ZEHP-050) covered with mineral oil (Sigma, M8410) on either a tissue culture dish (Falcon, 353001) or petri dish (Falcon, 351008) and then cultured at 37°C in a CO2 incubator (Thermo Scientific, Heracell 240i) with 5% CO2.
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4

In vitro Anti-plasmodial Assay Protocol

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Plant materials were dried under the shade and grinded using an electric grinder. One hundred gram of individual material was macerated into 1 L of each solvent and thoroughly mixed using a sterilized glass rod at room temperature. The solution was kept for 24 h and mixed after every 2 h. Extracts were filtered through Whatman No. 1 filter paper, freeze dried and kept at 4 °C in well-closed containers for use in the anti-plasmodial assay. The extracts were dissolved in dimethylsulfoxide (DMSO) at concentration of 1 mg/ml and then diluted with incomplete medium (without serum) to achieve required concentrations of 0.1, 0.5, 1, 5, 10, 20 and 30 μg/ml for evaluation against known P. falciparum chloroquine sensitive strain, 3D7 (SS) and chloroquine resistance strains, LS1 (RS). P. falciparum culture was maintained in vitro on human erythrocytes (blood group O+) in RPMI-1640 medium (Sigma) supplemented with 10 % AB+ human serum, 25 mM N-2-hydroxyethylpiperazine-N′-2-ethanesulfonic acid (HEPES buffer; Sigma Aldrich), 25 mM NaHCO3 and 60 µg/ml gentamicin sulfate (7.2 pH) at 37 °C and 5 % CO2 in a CO2 incubator (HERA cell 240i, Thermo Scientific).
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5

SH-SY5Y Neuroblastoma Cell Differentiation

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The SH-SY5Y neuroblastoma cell line (ECACC) was cultured in T80 flasks (Nunc™, Fisher Scientific, UK) in growth media (GM), composed of 89% Gibco™ Dulbecco’s Modified Eagles Medium (DMEM) supplemented with GlutaMAX (Fisher), 10% fetal bovine serum (FBS, Pan Biotech, UK), 1% penicillin-streptomycin (Fisher) until 80% confluence was attained, prior to being harvested for experimental use. SH-SY5Y cells were cultured for 48 h in GM prior to inducing neuronal differentiation via medium (DM) containing GM supplemented with 1μM retinoic acid (Sigma) differentiating agent for a further 72 h. All cell lines were incubated within a 5% CO2 atmosphere at 37°C (HERAcell 240i, Thermo Fisher, UK) for the duration of all experiments.
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6

Microglia Depletion in Slice Cultures

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For the depletion of the microglia from the slice cultures, 1:10 of liposome-encapsulated clodronate (Lip-CL - Merck Chemicals GmbH, Darmstadt, Germany) solution (0.5 mg/mL) was used. After preparation of OHSC, as described above, the slices were incubated overnight (35 °C in humidified atmosphere with 5% CO2 - Heracell 240i, Thermo Scientific) with culture medium containing Lip-CL. Then, slices were rinsed in DPBS at 35 °C and cultured in standard culture medium for another 6 days [22 ]. This procedure reduces the microglia population to less than 5%, but it does not affect the astrocytes and neuron cells [22 , 24 (link)].
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7

Growth of Human Cell Lines

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Human keratinocytes cell lines from adult skin (HaCaT cells) purchased by Cell Line Service (CLS Eppelheim, Baden-Württemberg, Germany) were grown in Dulbecco’s modified Eagle’s medium (DMEM, Merck KGaA, Darmstadt, Germany), supplemented with 4.5 g/L glucose, 2 mM L-glutamine and 10% heat-inactivated fetal bovine serum (FBS) (Merck KGaA, Darmstadt, Germany).
The human monocytic leukemia cell line (THP-1) was purchased from the ATCC (Manassas, VA, USA) and maintained in RPMI 1640 (Merck KGaA, Darmstadt, Germany) added with 0.05 mM of 2-mercaptoethanol, 10% of FBS, glutamine (2 mM), penicillin (100 U/mL), and streptomycin (100 mg/mL) (Merck KGaA, Darmstadt, Germany). Both cells were cultured at 37 °C in a 5% CO2 humidified incubator (HeraCell 240i, Thermo-Fisher Scientific, Waltham, MA, USA).
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8

Culturing Fibroblast, 293T, and Hep3B Cells

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All fibroblast cell lines were cultured in MEM medium (Hyclone, Cat. #SH30234) supplemented with 10% fetal bovine serum (Life Technologies, Cat. #16000), 1× nonessential amino acid (Hyclone, Cat. #SH3023801) and 1% penicillin/streptomycin (Hyclone, Cat. #SV30010). 293T and Hep3B cells were cultured in DMEM medium (Corning, 10-013-CVR) supplemented with 10% fetal bovine serum (Life Technologies, Cat. #16000), 1 × nonessential amino acid (Hyclone, Cat. #SH3023801) and 1% penicillin/streptomycin (Hyclone, Cat. #SV30010). The cultures were maintained in a 5% CO2 and 3% O2 humidified incubator (Thermo Fisher Heracell 240i) at 37°C.
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9

In Vitro Culture of Patterned Embryos

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In Vitro Culture medium (IVC1 and IVC2) was prepared as described (Bedzhov et al, 2014 (link)). Hydrogels with microfabricated crypts (see “Hydrogel formation” and “Fabrication of topographically patterned hydrogels”) were equilibrated in 3 ml of IVC1 medium in an incubator with a humidified atmosphere of 5% CO2 at 37°C (Thermo Scientific, Heracell 240i) for at least 12 h prior to 3E‐uterus embryo culture. After recovery at noon on embryonic day 3.5 (E3.5), embryos were serially transferred to IVC1 microdrops in a culture dish covered with mineral oil (Sigma, M8410‐1L). The time of embryo culture was counted from the time of embryo recovery (D0 = E3.5). In approximately 1 h after recovery, embryos were briefly treated in Tyrode's solution (Sigma, T1788) to remove Zona pellucida, washed repeatedly (Behringer et al, 2014 ), and left in a culture dish with IVC1 medium for at least an hour inside the incubator. Zona‐free embryos were carefully positioned inside microfabricated hydrogel crypts in a downward mTE orientation with a fused tip of a thin glass pipette. Precise positioning of the embryo within a crypt is a critical step significantly effecting the efficiency. The medium was exchanged to IVC1 in 24 h (Day 1) and to IVC2 in 48 h (Day 2).
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10

Characterization of Organic Compounds

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Spectra of the compounds were determined in a Genesys 10SUV/Vis spectrophotometer (Thermo Scientific, Waltham, MA, USA). Purity of the comopunds was determined by HPLC (Elite LaChrom, VWR Hitachi, Langenfeld, Germany), combining a RP18 column with a diode arry detector. The enzymatic activity of CK2 with and without inhibitors was quantified in a CE PA800 plus (Beckman-Coulter, Krefeld, Germany). For recording of NMR spectra, a Varian AS Mercuryplus NMR spectrometer (Agilent, Santa Clara, CA, USA) was used and an IR Affinity-1 (Shimadzu, Kyoto, Japan) for IR spectra. Human cell lines were cultivated in a cell culture incubator Heracell 240i (Thermo Scientific, Waltham, MA, USA) and microscoped by a Zeiss Axiovert 25 (Zeiss, Jena, Germany). Proteins were seperated by SDS-PAGE in a Mini-Protean Tetra System and for Western blotting a Western Blot Miniprotean II cell (both from Bio-Rad, München, Germany) was used.
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