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7 protocols using cholesteryl hemisuccinate

1

Nicotinic Receptor Purification and Characterization

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1 L of GnTI-HEK cells was transduced with α4 and β2 pEZT-based bacmam viruses in the presence of 0.1 mM (−)-nicotine (Sigma Aldrich) and 3 mM sodium butyrate (Sigma-Aldrich). After shaking for 72 hours at 30 °C and 8% CO2 the cells were harvested and lysed (Avestin EmulsiFlex-C5), followed by centrifugation at 9,800 g for 15 minutes at 4 °C. The supernatant was collected and centrifuged at 185,700 g for 2 hours at 4 °C to pellet the membranes. Membranes were homogenized, then solubilized with 20 mM Tris pH 7.4, 150 mM NaCl, 40 mM DDM, 1 mM PMSF, 1 mM nicotine and 0.2 mM cholesteryl hemisuccinate (Anatrace) for 1 hour at 4°C. The solubilized protein was then purified by a Strep-Tactin (IBA) affinity column. Concentrated affinity fractions were incubated with endoglycosidase H overnight in a 1:8 w:w ratio of enzyme:receptor. Purification via preparative Size Exclusion Chromatography (SEC) followed on a Superose 10/300 GL column; fractions were pooled and concentrated to 1.6-1.9 mg/mL for direct use in crystallization. Identities of bands in SDS-PAGE (Figure 6A) were confirmed by tryptic digest and mass spectrometry.
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2

Lipid and Detergent Preparation for Biophysical Studies

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Lipids: 1,2-dioleoyl-sn-glycero-3-phosphocholine (18:1 PC, DOPC), 1,2-dinervonoyl-sn-glycero-3-phosphocholine (24:1 PC, DNPC), 1-palmitoyl-2-{6-[(7-nitro-2–1,3-benzoxadiazol-4-yl)amino]hexanoyl}-sn-glycero-3-phosphocholine (NBD-PC), cholesterol, 1,2-distearoyl-sn-glycero-3-phosphoethanolamine-N-[biotinyl(polyethylene glycol)−2000] (DSPE-PEG(2000)-biotin), 1,2-dioleoyl-sn-glycero-3-[(N-(5-amino-1-carboxypentyl)iminodiacetic acid)succinyl] (nickel salt, DGS-NTA-Ni), L-α-phosphatidylcholine from chicken egg (Egg PC) were purchased from Avanti Polar Lipids.
Detergents: n-dodecyl-N,N-dimethylamine-N-oxide (LDAO), n-dodecyl-β-D-maltopyranoside (DDM), n-octyl-β-D-glucopyranoside (OG), and cholesteryl hemisuccinate (CHS) were purchased from Anatrace.
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3

Purification and Reconstitution of Human NTCP

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Human NTCP proteins were expressed in High Five insect cells (Thermo Fisher Scientific) using the Bac-to-Bac baculovirus expression system (Thermo Fisher Scientific), and cultured cells were disrupted by homogenization. The membrane fraction was isolated and solubilized with 1% dodecylmaltoside (DDM; Anatrace, Maumee, OH). Solubilized proteins were purified with StrepTactin affinity beads (StrepTactin Sepharose; GE Healthcare, Chicago, IL), an anion-exchange column (HiTrap Q HP; GE Healthcare), and a size exclusion column (Superose 6 Increase; GE Healthcare) in Tris-HCl buffer (pH 7.0) containing 0.1 M NaCl, 0.05% DDM, and 0.002% cholesteryl hemisuccinate (Anatrace). Purified proteins were reconstituted into liposomes consisting of egg phosphatidylcholine with the adjuvant lipid A (50 (link), 51 (link)).
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4

Biochemical Extraction of Membrane Proteins

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Detergents, dodecyl-β-maltoside (DDM), glyco-diosgenin (GDN), digitonin, cholesteryl hemisuccinate (CHS) and brain polar lipids were purchased from Anatrace Inc. Calmodulin (from bovine testes, Catalog No: P1431) was purchased from Sigma-Aldrich. All other chemicals were obtained from Sigma-Aldrich (St. Louis, MO, USA), unless indicated otherwise.
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5

Detailed Chemical Compound Sourcing

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All chemicals were purchased from Sigma-Aldrich, Merck and Roth unless otherwise noted. n-dodecyl-β-D-maltopyranoside (DDM), lauryl maltose neopentyl glycol (LMNG), and cholesteryl hemisuccinate (CHS) tris salt were purchased from Anatrace (through CliniSciences, France). Glyco-diosgenin (GDN) was purchased from Avanti Polar Lipids through Merck. SNAP-Lumi4-Tb, SNAP-green, SNAP-Cy3B, and SNAP-d2 were obtained from Cisbio Bioassays (Codolet, France). DCG-IV, LY341495, LY379268, LY354740, LCCG-I, BINA hydrochloride, and Ro64-5229 were purchased from Tocris Bioscience (Bristol, UK).
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6

Structural Determination of GABA(B) Receptor-G(i1) Complex

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The GB1 and GB2 plasmids mixed with PEI 25 K at a 3:0.5:0.5 ratio of PEI to GB1 and GB2 plasmid (w/w) were added to HEK293F cells when the density reached about 2.8 million per ml. Seventeen hours after infection, sodium butyrate was added at a final concentration of 10 mM and the cells were grown for another 3 days at 30 °C before being collected11 (link). The collected cells were solubilized for 3 h at 4 °C in a buffer containing 0.5% (w/v) lauryl maltose neopentyl glycol (Anatrace) and 0.1% (w/v) cholesteryl hemisuccinate (Anatrace). After centrifugation at 30,000g for 30 min, the GABAB was purified by Ni-NTA column and M1 anti-Flag affinity resin. The GABAB was further concentrated and mixed with a 1.3 molar excess of Gi1–scFv16 complex in the presence of 100 μM baclofen and 50 μM BHFF. The sample was incubated at 25 °C for 1 h, followed by the addition of 0.2 U ml−1 apyrase for an additional 1.5-h incubation at 24 °C36 (link). Finally, the sample was purified using a Superose 6 Increase column (GE Healthcare) to acquire a homogeneous GABAB receptor–Gi1 complex. The entire purification procedure was accomplished in 12 h, followed by immediate verification to acquire a stable and fresh sample for structural determination.
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7

Protein Purification via Flag-Tag Affinity

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For protein purification, 2 mM ATP (Sangon Biotech) and 2 mM MgCl2 were added to the thawed suspension, and the mixture was incubated with additional 1% (wt/vol) DDM (Bluepus) and 0.2% (wt/vol) cholesteryl hemisuccinate (Anatrace) at 8 °C for 2 h for membrane solubilization and protein extraction. After ultracentrifugation at 45,000 rpm for 45 min (Beckman Type 70 Ti), the supernatant was incubated with the anti-Flag M2 affinity gel (Sigma) on ice for at least 40 min. Then, the resin was washed by 30 mL of wash buffer containing 50 mM Tris⋅HCl (pH 7.5), 150 mM NaCl, and 10% (vol/vol) glycerol, with 0.02% GDN (wt/vol; Anatrace) for ATP8B1–CDC50A or 0.06% digitonin (wt/vol; Apollo Scientific) for ATP8B1–CDC50B. The protein was eluted with 6 mL of wash buffer plus 200 µg/mL Flag peptide. The samples were further concentrated and purified by SEC on a Superose 6 Increase 10/300 or Superdex 200 Increase 10/300 gel-filtration column (GE Healthcare), pre-equilibrated with SEC buffer (50 mM Tris⋅HCl, pH 7.5, 150 mM NaCl, and 0.02% GDN or 0.06% digitonin). The purified samples were analyzed by SDS-gel electrophoresis with a commercial precast acrylamide gel (with a gradient from 4 to 20%). The peak fractions were collected, concentrated to 4 to 6 mg/mL, frozen in liquid nitrogen, and stored at −80 °C before use.
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