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4 protocols using ab412

1

Protein Expression and Detection Protocol

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GFP-tagged proteins were recognized with a monoclonal α-GFP antibody (Roche; 1:1000) and arginine methylation was recognized with a monoclonal α-mono and dimethyl arginine antibody (Ab412, Abcam; 1:500), followed by a secondary α-mouse-horseradish peroxidase (HRP) antibody (GE Lifesciences; 1:5000). Slr1-TAP was recognized with an HRP-conjugated goat anti-Protein A (PrA) antiserum (Rockland; 1:10,000). Ribosomal protein Rps3 was recognized with a polyclonal rabbit antibody against Rps3 (1:1000). Proteins were visualized through enhanced chemiluminescence (Pierce) and autoradiography.
Anti-rabbit IgG (H+L)-HRPO and anti-mouse IgG (H+L) HRPO (Dianova) secondary antibodies were used for sucrose density gradient fraction immunoblots. The signals were detected with Amersham ECL Prime Western Blotting Detection Reagent (GE Healthcare) and the FUSION-SL chemiluminescence detection system (Peqlab) and the Western blot analyses were quantified using the Image StudioLite software (LI-COR).
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2

High-Throughput Screening of PRMT5 Inhibitors

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Ten-thousand small-molecule compounds from a DIVERSet library (ChemBridge) were screened as follows: High-binding 96-well plates (Fisher Scientific) were coated with 100 ng of recombinant SmD3 (the substrate) at 4 oC overnight. After blocking with 5% BSA for 30 min at room-temperature, PRMT5-WDR77 (800 ng) was added to each well. DIVERSet compounds were then transferred to individual wells to a final concentration of 20 μM. The enzyme reaction was initiated by the addition of the methyl donor (AdoMet, 10 μM). Reaction mixtures were incubated for 3 h at 30 oC. The wells were then washed twice with TBST (25 mM Tris [pH 7.5], 150 mM NaCl, 0.1% Tween 20) and blocked in TBST containing 2% BSA for 30 min. The methylarginine-specific primary antibody ab412 (Abcam) (1:1,000) and secondary antibody (anti-mouse IgG-peroxidase at 1:10,000; Fisher Scientific) were added to each well and the mixtures were incubated at room-temperature for 1 h. After three washes with TBST, 0.1 ml of 3,3′,5,5′-tetramethylbenzidine (TMB) substrate (0.1 mg/ml) was added to each well. Wells were incubated for 5 min in the dark at room-temperature and the reaction was stopped by addition of 0.1 ml of 2 M H2SO4 per well. Potential “hits” were compounds associated with at least a 90% reduction in optical density at 450 nm (in duplicate).
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3

Immunoblotting and Quantification of Methylated Proteins

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GFP‐tagged proteins were recognized with a monoclonal α‐GFP antibody (Roche; 1:1000) and arginine methylation was recognized with a monoclonal α‐mono and dimethyl arginine antibody (Ab412, Abcam; 1:500), followed by a secondary α‐mouse‐horseradish peroxidase (HRP) antibody (GE Lifesciences; 1:5000). Slr1‐TAP was recognized with an HRP‐conjugated goat anti‐Protein A (PrA) antiserum (Rockland; 1:10,000). Ribosomal protein Rps3 was recognized with a polyclonal rabbit antibody against Rps3 (1:1000). Proteins were visualized through enhanced chemiluminescence (Pierce) and autoradiography.
Anti‐rabbit IgG (H + L)‐HRPO and anti‐mouse IgG (H + L) HRPO (Dianova) secondary antibodies were used for sucrose density gradient fraction immunoblots. The signals were detected with Amersham ECL Prime Western Blotting Detection Reagent (GE Healthcare) and the FUSION‐SL chemiluminescence detection system (Peqlab) and the Western blot analyses were quantified using the Image StudioLite software (LI‐COR).
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4

Immunoprecipitation of Arginine-Methylated FUS

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RALY KO or control HeLa cells were lysed in CHAPS buffer (50 mM Tris–HCl pH 7.5, 150 mM NaCl, 1 mM EDTA, 0.5% CHAPS, 10% glycerol, protease inhibitor cocktail, phosphatase inhibitor cocktail) and centrifuged at 14,000 × g for 10 min at 4°C. For IP, protein extracts were incubated O/N in a total volume of 1 ml at 4°C with protein A magnetic beads coated with 2 μg of rabbit anti-FUS/TLS (ab23439, Abcam). Beads were washed four times with CHAPS buffer, solubilized in reducing (DTT-containing) sample buffer, and analyzed by SDS–PAGE and Western blotting. The membrane was probed with rabbit anti-FUS/TLS to measure the amount of immunoprecipitated FUS, and with anti-mono and dimethyl arginine antibody (ab412, Abcam). To compare the levels of arginine methylation in RALY KO or control cell extracts, band optical density (OD) was measured and normalized as follows: [FUS IP mono and diMeArg OD/(FUS IP/FUS input)]. The experiment was repeated three times.
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